Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3288 ATGGAGAATTCGAGCAGCAGAAACGACTCCTTGAGCCTCTGTAATGACAGTCATGACCCACTGAACTGGGTCATGGCTGCAGAGGCCCTAAAGGGTAGTCATCTCGACGAGGTAAAGCGGATGATAGAAGAGTACAGGAAGAAGGAGGTGTTCTTGGGTGGCAAGGGACTCACCATATCCCAGGTGGCCGCGGTGGCCATGAACGACGATGGTGGCGTGGCGGTGGCTCTGGCGGAGGAGGCACGTGCCGAGGTGAAGGCAAGCAGCGATTGGGTGAGGGAGAGCATGGACAAAGGCATGGACAGCTATGGTGTCACCACAGGGTTTGGTGCAACCTCACACAGGAGAACCAAGCAAGGTGGTGCCCTTCAAAATGAACTCATAAGATTCTTGAATGCCGGAATATTCGGCAACGGCACAGAATCTTGTCACACATTGTCCCACACAGCAACAAGGGCAGCCATGTTGGTTAGGATCAACACATTGCTCCAAGGCTATTCCGGAATCAGATTCGAGATCTTGGAAGCCATAACAAAGTTCCTCAACCACAACATTACACCATGCCTCCCTCTCCGCGGCACCATCACCGCCTCCGGCGACCTCGTCCCGTTGTCCTACGTAGCGGGCCTTCTAATCGGAAGGCCCAACTCCAAGTCAGTTGGGCCTAACGGACAACTCCTCAATGCCAAAGAGGCCTTCGAGCTGGCCGGAATCAACAGTGGTTTCTTTGACTTGCAGCCCAAGGAAGGTCTGGCTCTGGTCAACGGAACTGCAGTTGGTTCTGGCCTAGCTTCCATGGTACTCTTCGAGGCCAACATACTCGCCGTCCTCTCGGAGGTTTTGTCGGCGATTTTCGCGGAAGTTATGCAGGGGAAGCCGGAGTTTACCGATCATCTAACTCACAAATTGAAGCACCACCCTGGTCAGATTGAAGCTGCAGCAATAATGGAACATATCTTAGATGGAAGCTCATATGTTAAAGCTGCAGAGAAGGTTCATGAGATTGATCCTCTTCAGAAGCCGAAACAAGATAGATACGCTCTTCGAACTTCGCCTCAATGGTTAGGACCACAAATTGAGGTGATTCGCCATAGCACGAAGATGATCGAGAGGGAGATCAACTCTGTAAACGACAATCCATTGATCGATGTGTCGAGGAACAAGGCGGTGCACGGGGGGAACTTTCAAGGGACTCCGATTGGTGTGTCGATGGATAACACCAGGCTGGCCATAGCATCCATTGGCAAACTCATGTTTGCTCAATTCTCCGAGTTAGTTAATGACTTTTACAACAACGGTCTGCCTTCGAATTTAACCGCTAGCCGGAATCCGAGCTTGGATTACGGCTTTAAAGGCGCGGAAATCGCCATGGCTTCATACTGCTCTGAGCTGCAATATCTTGCAAACCCTGTGACAAACCATGTTCAGAGTGCTGAGCAACATAACCAAGATGTGAACTCCTTGGGATTGATCTCATCAAGAAAAACAGCAGAGGCAGTTGATGTATTGAAGCTGATGTCATCAACTTACTTGGTAGCGTTGTGCCAAGCCATTGATCTTAGGCATTTAGAGGAGAATCTGAAGAACACGGTGAAGAACACAGTGAGCCAAGTGGCCAAAAGGGTGCTCACAATGGGGGTAAACGGCGAGTTACATCCGTCCAGGTTCTGCGAAAAGGACTTGCTCAAGGTCGTGGATCGCGAGTATGTGTTCGCCTACGCCGATGATGCGTGCAGCGCAAGCTACCCTCTGATGCAGAAGCTGAGACAAGTCTTGGTTGATCATGCTTTACAGAATGGTGAGAAAGAGTGCAATGCAAGCACCTCAATTTTCCAAAAGATTGGAGCTTTTGAGCAAGAGCTGAAGACCCTTTTGCCCAAAGAGATTGAGAGTGCAAGAATTGGAGTTGAGAATGGAAATGCTGCTGTTCCTAACAGAATCAAGGAGTGTAGATCATATCCAATTTACAAGTTTGTGAGAGAAAATTTGGGAACAGATTTACTGACAGGTGAGAAAGTTAGGTCCCCTGGTGAGGAATGTGATAAGGTATTCACTGCTATGTGTCAAGGAAAATTGATTGATCCAATGTTGGAATGTCTAAAGGAGTGGAATGGTTCTCCTCTTCCAATATCCTAG 2136 0.4906 MENSSSRNDSLSLCNDSHDPLNWVMAAEALKGSHLDEVKRMIEEYRKKEVFLGGKGLTISQVAAVAMNDDGGVAVALAEEARAEVKASSDWVRESMDKGMDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTESCHTLSHTATRAAMLVRINTLLQGYSGIRFEILEAITKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSVGPNGQLLNAKEAFELAGINSGFFDLQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAEKVHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHSTKMIEREINSVNDNPLIDVSRNKAVHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDVLKLMSSTYLVALCQAIDLRHLEENLKNTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLLKVVDREYVFAYADDACSASYPLMQKLRQVLVDHALQNGEKECNASTSIFQKIGAFEQELKTLLPKEIESARIGVENGNAAVPNRIKECRSYPIYKFVRENLGTDLLTGEKVRSPGEECDKVFTAMCQGKLIDPMLECLKEWNGSPLPIS* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3288 711 Pfam Aromatic amino acid lyase 57 534 IPR001106 -
Amo19g3288 711 Gene3D Fumarase/aspartase (Central domain) 258 705 - -
Amo19g3288 711 CDD PAL-HAL 55 521 IPR001106 -
Amo19g3288 711 SUPERFAMILY L-aspartase-like 19 710 IPR008948 GO:0003824
Amo19g3288 711 Coils Coil 711 711 - -
Amo19g3288 711 Gene3D - 524 645 IPR023144 -
Amo19g3288 711 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 15 710 - -
Amo19g3288 711 Gene3D - 12 257 IPR024083 -
Amo19g3288 711 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 19 701 IPR005922 GO:0005737|GO:0006559|GO:0016841
Amo19g3288 711 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 193 209 IPR022313 GO:0016841
Amo19g3288 711 PANTHER HISTIDINE AMMONIA-LYASE 15 710 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3288 Amo-Chr19 144506404 144513090 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3288 19 710 Monolignol Biosynthesis Gene Families AT3G53260 82.948 0.0 1218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3288 K10775 - gmx:100818777 1247.65