Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3266 GACTTGGTAGACTCTTTTAAGATGTCTTTTGCGAGAGGATTTAATGACGTTCGTTGGCCCAGTCACCTGCGGTTGGTAGTCTCCGAGCTGGATCGCACACTGGAGCCTCCTTCCGACTTGTGTGAGCGAATGAATGGGGGGTGGTACCTATTAGGCCTTTTATTTGGATCTGGGCCTTTGACATTGGGTCAGGGTATGAACAATATTTATATTTTAGTATTAAGAAAGGCCTACAATCGTGGCTCTTTTATGAGGAGGAGGGTTCATCCTCCATGTTTGATGCATGGCAAGTTTGCTTTTTTCAGAGAACCTGCGTTCCGCTATGATGCAGGTGATGATGAGAGACCAATTTATGAGGCCATTATGGAGGATCTCACTCAGACTAGAACAGAAGCTAATGTATCCGATGGTCTAATGTATGTTTCTCTTCTGAAACATCAGAAAATTGCATTGGATTGGATGCTTCAGAAGGAAACCAGAAGTTTGCATTGCCTTGGGGGTATTTTGGCTGATGATCAGGGCCTTGGCAAGACAGTTTCAATGATTGCCCTCATCCTAATGCAGAGGTTACTGCTCTCAAGATCTAAAACAAACGATGCATCCAATCATAAAACTGAAGCTTTGAATTTGGATGATGAAGATGATCGTGTTACTGTTGATGTGGAAAAGCTTGAAAATAAAGAAGAATCTGATGATGTAGAAGCTATTACAGAACCTAGGAAACGGCCAGCTGCTGGTACACTTGTTGTTTGCCCGGCAAGTGTTCTTCGACAATGGGCCAGAGAGCTTAAAGAAAAAGTTGTTGAAGAGCAGAAACTTACTGTTTTGGTTTATCATGGGGGCAGCAGGACAAAGGATCCTACTGAACTTGCAAGATATGATGTGGTCCTCACAACATATGCTGTTGTGACTAATGAAGTTCCAAAGCAGCCATTGGTTGAGGAGGATGATATTGATGAAAAAATAGGGGAAATATTTGGAAGTAAGAAAACTAAAAAGGGTAGAAAGGGATTAGACGATTCTTCGATTGAATGTGCTTCTGGTCCTCTTGCAGAAGTACGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACAATAAAGAACCATAGAACTCAGGTAGCTAGAGCTTGCTGCAGTCTTAGGACCAAAAGAAGGTGGTGCTTATCTGGAACACCTATTCAAAATACTATCGATGATCTTTATAGCTACTTTAGGTTCCTGAAGTATGATCCTTATGGTGTATATAAATCGTTCTACAATACAATAAAAGTTCCAATATCCAGAAATTCTATAGAAGGGTACAAGAAGCTTCAAGCAATTTTGTGGACTATTATGCTTCGCCGTACAAAAGGAACTATGATCGATGGGAAGCCAATAATCAATTTACCTCCTAAAACAATTGAGCTGACTAAGGTGGATTTCTCCACTGAGGAACGGGCCTTCTATATGCAGTTGGAAGATGATTCCCGTTCCCAATTTAAGGCATATGCTGCTGTTGGCACTGTGAATAAAAACTATGCAAATATTCTTTCAATGCTTTCCCGTCTTCGTCTAGCTTGTGATCACCCGCATCTTGTTAAAGGTGACTATTGTCATTCACTAATTCTGCATTCAAATTGTAAACTGAATAGTCCTAGCTCTGGTTTACTAAATTCTGCTGGAAGCCGTAGAGGTTCACCATCTTCTGATGATTCATATATTGAAGATTGCGACTCAGATGCCAGGATTATGAAACAAACAAGAAAATATTCAGAGTCAACAACTGTAGGACCAATAAAGGCTGTAGTTTTTTCCCAATGGACTAGAATGTTGGACTTAGTTGAGGCATCATTGCAACAATCCCGTATACAATACAGGAGACTTGATGGGACGATGTCTCTGATTGCTAGAGACAGATCTGTTAAAGATTTTAATACTGATCCCAAGGTAACTGTTATGCTGATGTCGCTAAAAGCAGGAAATCTTGGTTTGAATATGGTTGCTGCGTGTCATGTTATTCTTTTGGATCCGTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCTCATAGAATTGGACAGACTCGTCCTGTTACAGTGACACGGCTCACTATAAAAGATACAGTTGAAGACAGAATACTGGCTCTTCAGGAAGAGAAGAGGAAAATGGTTGCATGCACTTTTGGTGAAGACCATGCCGGCAGCTCTGAGACTCGCCTTTCAGTGGATGATCTGAAATATCTTTTCGGTGTAGATTCTTAG 2247 0.4099 DLVDSFKMSFARGFNDVRWPSHLRLVVSELDRTLEPPSDLCERMNGGWYLLGLLFGSGPLTLGQGMNNIYILVLRKAYNRGSFMRRRVHPPCLMHGKFAFFREPAFRYDAGDDERPIYEAIMEDLTQTRTEANVSDGLMYVSLLKHQKIALDWMLQKETRSLHCLGGILADDQGLGKTVSMIALILMQRLLLSRSKTNDASNHKTEALNLDDEDDRVTVDVEKLENKEESDDVEAITEPRKRPAAGTLVVCPASVLRQWARELKEKVVEEQKLTVLVYHGGSRTKDPTELARYDVVLTTYAVVTNEVPKQPLVEEDDIDEKIGEIFGSKKTKKGRKGLDDSSIECASGPLAEVRWFRVILDEAQTIKNHRTQVARACCSLRTKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYGVYKSFYNTIKVPISRNSIEGYKKLQAILWTIMLRRTKGTMIDGKPIINLPPKTIELTKVDFSTEERAFYMQLEDDSRSQFKAYAAVGTVNKNYANILSMLSRLRLACDHPHLVKGDYCHSLILHSNCKLNSPSSGLLNSAGSRRGSPSSDDSYIEDCDSDARIMKQTRKYSESTTVGPIKAVVFSQWTRMLDLVEASLQQSRIQYRRLDGTMSLIARDRSVKDFNTDPKVTVMLMSLKAGNLGLNMVAACHVILLDPWWNPTTEDQAIDRAHRIGQTRPVTVTRLTIKDTVEDRILALQEEKRKMVACTFGEDHAGSSETRLSVDDLKYLFGVDS* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3266 748 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 110 529 - -
Amo19g3266 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 448 IPR027417 -
Amo19g3266 748 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 575 741 IPR001650 -
Amo19g3266 748 CDD SF2_C_SNF 593 698 - -
Amo19g3266 748 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 158 410 IPR014001 -
Amo19g3266 748 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 535 744 - -
Amo19g3266 748 SMART ultradead3 139 427 IPR014001 -
Amo19g3266 748 Pfam Helicase conserved C-terminal domain 592 688 IPR001650 -
Amo19g3266 748 Pfam SNF2-related domain 155 526 IPR000330 GO:0005524|GO:0140658
Amo19g3266 748 SMART helicmild6 605 688 IPR001650 -
Amo19g3266 748 Gene3D - 463 747 IPR027417 -
Amo19g3266 748 Gene3D - 338 449 IPR038718 -
Amo19g3266 748 Gene3D - 145 207 IPR038718 -
Amo19g3266 748 Gene3D - 227 320 IPR038718 -
Amo19g3266 748 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 110 529 - -
Amo19g3266 748 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 535 744 - -
Amo19g3266 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 457 747 IPR027417 -
Amo19g3266 748 CDD DEXDc_SHPRH-like 143 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3266 Amo-Chr19 143946602 143954970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3266 576 646 RAD5 or RAD16-like Gene Family AT1G50410 59.155 4.19e-19 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo19g3266 SNF2_N 2.1e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3266 - - ahf:112712269 1144.41