Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3265 ATGCGGGGAAACCTTCTCGGAACCACCGACAAGCGGCCGAAACCCCTGTCTCCAACGAAGGCGCCACCCATCCTTCCGGGCGAGGTGATCGAGGAGATCCTGGTGAGGGTCCCGGCGAGTAGCCTTGTGAAATTGAAGATTGTGTGCAAATCATGGAATGCACTAATCTCCAACCCCGAATTCGTCAGCGACAACCTTCACCGGTCAAGAGCAGATCCAAGACTGGTATATCGCTTTCGAGATAGTCGCAAAATCCACTTTTCGTCGGTGCAGTCTCTGTTCAAGAACCCATCCGCCCTTCTTACCAAAGATGGCTGCTTCGAGATGGATGGTGATCTGCATATCTTGGGTTCCTGCAATGGCTTGATCTGCCTCGGCATGATGAACAGTCGTTTTCACTTGGGATCCATCCGATTGTGGAACCCCTGTACCAGATCGGCATCGGATTGGTTGAAAATTCGGGCGATAAAGGATGACATGTATGGTTTTGGCTATGATCATGTGCATGATAATTACAAGTTTCTCGAGGGTTGTTCGATATACGGCCACAAAATCCACACCTTCGGTTCGAATTATTGGACAACCATCGTTCAAGATCCCCGATTTTACCACCCCAAGCTGGGGTTAGGGACGTTTGTGTATGGCTCTCTGAATTGGGCAGCTCAGGCTCATAGCAACTTTCTCGAATGGGTGATCATTTCCTTTGACTTAGCCAACGAGAATTTTGCCCCATTGTCTCTGCCTGATATGAATAATAGGGACGAGCATTATGATCCTGCGGTGGGTGTGTTGAGGGACAGGCTTTGTGTTTGTTTGAAGGAAAACTATGGTGGTTGGATTTTGTGGGTGATGAAGGAGTATGGGGTTCAAAAGTCATGGACTAAGTTGATCACCGTATTTAGTAATGAGCGCGTATATCCACCCATGTTTTATTCACTTAAAGCCATGTACATGACGGAAAATGATGACGTTGTGGCTGTTTCCCTTAGTCCCAGTGATTCTAGAATTTTCAAATTAGTTATTATTAGTTCAAATGATGCCCGCAGATCGCATCGAATTTTCGGCCAACGAACTTTAGTCGACGCAGATCATCAGAATTGCTATGTTTACCAAGAAAGCTTGGTTTCGCCCTCCCATTTAGGCCTTCCAATTATACTGTTGTTGAGAAATACACATGTGCCCACACTGGACACTGGTAAAGATTTAGGATTTTCTTATATGTTGTCAATGTCATTATGGAACTGCATGGATCCACCTGAAGACCCTGTTGTTACAATGCGTGGCCATGTCTTCTGTTATCAATGTGTATCAGATTACTTGAATGGTGATGGTAATACATGCTCTGCTCCTGGTTGTAAAGCAGCACTTGCAGAAGATGCTGTTTTCTCCAAGGCTACGTTGAAGAGTTGCTTGTGTGATGAACTTTGTGGTAGTAATTCCATAAAAGTGCATGATTTTGCTCATTCACTAGTGCAGCAGAGTGACTCTGGTTTACTAAATTCTGCTGAAAGCCATAGAGGTTCACTACTATCTTCTGATGATTCATATATTGAAGATTGCGACTTAGATGCTAAGATTATGAAACACACAAGAAAATATTCACAAATGTTGGACTTAGTTGAGGCATCATTGCAACAATCCCCTATACAATACAGGAGACTTGATGCGACGATGTCTCTGATTGCTAGAGACATATCTGTTAAAGATTTCAATACTGATCCCGAGGTAACTGTTATGCTGATGTCGCTGAAAGCAGGAAATCTTGGTTTGAATATTGTTGCTGTGTATCGAGCTCATAGAATTGGACAGATTCGTCCTGTTACAGTGACACGGCTCACTATAAAAGATACAGTTGAAGACAGAATACTGGAAGAGGAGGAAAATGGTTGCATCCACCTTTGTGAAATACGTAAAATGACGGTTTTGCCAAATGCAGTTTTGGATGAGTACGATAATTGTAATTAG 1965 0.4366 MRGNLLGTTDKRPKPLSPTKAPPILPGEVIEEILVRVPASSLVKLKIVCKSWNALISNPEFVSDNLHRSRADPRLVYRFRDSRKIHFSSVQSLFKNPSALLTKDGCFEMDGDLHILGSCNGLICLGMMNSRFHLGSIRLWNPCTRSASDWLKIRAIKDDMYGFGYDHVHDNYKFLEGCSIYGHKIHTFGSNYWTTIVQDPRFYHPKLGLGTFVYGSLNWAAQAHSNFLEWVIISFDLANENFAPLSLPDMNNRDEHYDPAVGVLRDRLCVCLKENYGGWILWVMKEYGVQKSWTKLITVFSNERVYPPMFYSLKAMYMTENDDVVAVSLSPSDSRIFKLVIISSNDARRSHRIFGQRTLVDADHQNCYVYQESLVSPSHLGLPIILLLRNTHVPTLDTGKDLGFSYMLSMSLWNCMDPPEDPVVTMRGHVFCYQCVSDYLNGDGNTCSAPGCKAALAEDAVFSKATLKSCLCDELCGSNSIKVHDFAHSLVQQSDSGLLNSAESHRGSLLSSDDSYIEDCDLDAKIMKHTRKYSQMLDLVEASLQQSPIQYRRLDATMSLIARDISVKDFNTDPEVTVMLMSLKAGNLGLNIVAVYRAHRIGQIRPVTVTRLTIKDTVEDRILEEEENGCIHLCEIRKMTVLPNAVLDEYDNCN* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3265 654 Gene3D - 524 595 IPR027417 -
Amo19g3265 654 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 415 626 - -
Amo19g3265 654 Pfam F-box associated 213 346 IPR006527 -
Amo19g3265 654 SUPERFAMILY RING/U-box 415 471 - -
Amo19g3265 654 Gene3D - 596 629 IPR027417 -
Amo19g3265 654 SUPERFAMILY F-box domain 16 88 IPR036047 GO:0005515
Amo19g3265 654 SMART fbox_2 25 65 IPR001810 GO:0005515
Amo19g3265 654 Gene3D - 22 74 - -
Amo19g3265 654 TIGRFAM F_box_assoc_1: F-box protein interaction domain 118 333 IPR017451 -
Amo19g3265 654 MobiDBLite consensus disorder prediction 1 21 - -
Amo19g3265 654 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 414 509 IPR013083 -
Amo19g3265 654 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 533 627 IPR027417 -
Amo19g3265 654 ProSiteProfiles F-box domain profile. 25 70 IPR001810 GO:0005515
Amo19g3265 654 CDD SF2_C_SNF 533 612 - -
Amo19g3265 654 Pfam F-box domain 25 61 IPR001810 GO:0005515
Amo19g3265 654 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 415 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3265 Amo-Chr19 143937502 143942530 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3265 415 623 RAD5 or RAD16-like Gene Family AT1G61140 39.231 1.20e-40 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3265 - - aip:107618301 403.29