Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3253 ATGCAGCGACTGAAGACTATGATGGGGTCCCGCGACTACATCCAAGCATTGGAACATGAACGCCGCAAGATTCAGGTCTTCTCCAAAGAGCTTCCTCTTTCCTTGGACCTCGTCACACAAGCCATTGAAGCGTGCAGGCAGCAGTTGTCTGAGACGACGACGGAGTACAACATGAACGGACACAATTCGGAGTGTTCGGAGCAGACAACATCAACCGACAACGGTCCTGTCTTGGAGGAGTTCATCCCAATTAAGAAGAGACCGTCATCTCCACATGAAGAAGAAGAAGAAGAAGATGATGATGATGATGACGATGAACAACATTCCCATCATCATCGCCACAAGATCTCGAAGGATAACACTGACAAGAGGAAATCAGATTGGCTTAGATCCGTTCAGTTGTGGAATAATCCAGAACCCTCATCACCACCTCATCAGGAGGTGAACAATAAGAAAGGTGGTGCGGTGGAAGTGAAGAGAAGTGGAAGTGGTGGTGCTTTTCAGCCATTTCACAAGGAGAAGGAGGAAAGAGTAGGTGGTGGTGGCGGCAAGGCAATTGCAAGTGATGATCTGAAACCACCGTGTTCCTCCAACAGCAGCAAGAAGGAAGAGAAAGAGGGGCAGAGGAAGCAACGCCGTTGCTGGTCTCAGGAGTTGCACAAACGATTCTTGCAAGCCCTTCAACAACTTGGAGGCCCTGATTCTGCCACACCGAAGCAAATCAGGGAGCTTATGAAAGTTGATGGCCTCACTAATGACGAAGTCAAAAGCCATTTACAGAAATACCGGTTACACACTAGAAGACCTAGTGGCATAGTTCACAACAATGGCAGTCCACAAACGACGCCGTTTGTCCTAGTAGGCAACATTTTTGTTCAACCGCCAGAATATGCCGCAGCGGCCGTGGCCACGTCAGCAGATCTAGCACCTGCCGGAATATATGCGCCTGTAGCCACGCATCCTCCTCCACCTCCTCCCCGGACGGCGGCTGGTTCCACTAGAAGACCGCAGTTGAAGAAATCATCAAACCACATGCGTGAAGATCATCATCATTCACACTCGGAAGAAGATAGGGCTAATCATTCAAACTCTCCAGCTTCATCATCATCCACACACACCACCACAACTACTTCCCCTGCCTATTGA 1146 0.4939 MQRLKTMMGSRDYIQALEHERRKIQVFSKELPLSLDLVTQAIEACRQQLSETTTEYNMNGHNSECSEQTTSTDNGPVLEEFIPIKKRPSSPHEEEEEEDDDDDDDEQHSHHHRHKISKDNTDKRKSDWLRSVQLWNNPEPSSPPHQEVNNKKGGAVEVKRSGSGGAFQPFHKEKEERVGGGGGKAIASDDLKPPCSSNSSKKEEKEGQRKQRRCWSQELHKRFLQALQQLGGPDSATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSGIVHNNGSPQTTPFVLVGNIFVQPPEYAAAAVATSADLAPAGIYAPVATHPPPPPPRTAAGSTRRPQLKKSSNHMREDHHHSHSEEDRANHSNSPASSSSTHTTTTTSPAY* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3253 381 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 9 376 - -
Amo19g3253 381 MobiDBLite consensus disorder prediction 340 360 - -
Amo19g3253 381 MobiDBLite consensus disorder prediction 196 214 - -
Amo19g3253 381 SUPERFAMILY Homeodomain-like 208 268 IPR009057 -
Amo19g3253 381 MobiDBLite consensus disorder prediction 361 381 - -
Amo19g3253 381 MobiDBLite consensus disorder prediction 55 76 - -
Amo19g3253 381 MobiDBLite consensus disorder prediction 55 214 - -
Amo19g3253 381 MobiDBLite consensus disorder prediction 315 381 - -
Amo19g3253 381 MobiDBLite consensus disorder prediction 130 148 - -
Amo19g3253 381 Gene3D - 209 267 - -
Amo19g3253 381 Pfam Myb-like DNA-binding domain 212 263 IPR001005 -
Amo19g3253 381 MobiDBLite consensus disorder prediction 316 330 - -
Amo19g3253 381 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 210 265 IPR006447 GO:0003677
Amo19g3253 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 376 IPR044787 GO:0003700|GO:0006355
Amo19g3253 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 267 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3253 Amo-Chr19 143598414 143600697 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3253 1 323 G2-like Transcription Factor Family AT1G68670 46.779 2.12e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo19g3253 Myb_DNA-binding 4.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3253 - - adu:107468029 634.024