Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3251 ATGGAAGCAGTTACTACTTCAACTGAGGAAACCGCCACAACCAGCGACTCACTTTCCATAACCCTATCCCCGGCTAAATCTCCTCCTCCGCCGCCGACAGCCAACAACAATACTGCCGACGGATGCGGCGTCGCCGCCGAGGTTGAATCCCGGAAGCTACCGTCGTCCAAGTACAAAGGCGTGGTGCCTCAGCCCAACGGCCGCTGGGGCGCGCAGATTTACGAGAAGCACCAGCGCGTGTGGCTTGGTACCTTCAACGAGGAGGACGAAGCCGCCAGGGCCTACGACATCGCGGCGGTCAGATTCCGCGGCAAGGACGCCGTCACCAACTTCAAGCACCTCACCGTAGCCGACGGTGACTCCGACGAATCCGACGACGGCTCAGAAACCGAGTTTCTGAATTCGCATTCCAAGTCCGAGATCGTGGACATGCTGAGGAAGCACACCTACGAGGAAGAGCTTCGTCAGAGCAAGCGAGGTGGCGCGTGCGGCGGAAAGAGGCACCGACGAGGCAACGGCGACAACSTCGACGCGTCCTCCTTCGGCTCTGAGGGCGCGTGCRATCTTCGCGCGCGTGAACAGCTGTTCGAGAAAACGGTTACGCCTAGYGATGTTGGTAAACTGAATCGGTTAGTTATACCGAAACAGCACGCGGAGAAGCACTTTCCGATACAGGGAAACGGTTGCGCCGCAGCGGCGAAAGGAGTGCTGTTGAATTTCGAAGACGTTGGAGGGAAAGTGTGGCGGTTCCGTTACTCGTATTGGAACAGTAGCCAGAGCTAYGTGCTCACGAAAGGGTGGAGCCGGTTCGTTAAGGAGAAGAGCCTYCGGGCTGGTGATGCGGTTCGGTTTTACCGGTCGGCTGGACCAGACGGACAGCTGTACATTGACTGCAAAGCAAGRATGGRTSGTGGTGGTGTTGTAAATAGCCCTAATGAAGATGATAATACGAAGAATAATAAAAGAAATAATGGTTTGTTGATTCCGGTTGGRCCGGTGGTTGAGCCGGTTCAGATKGTACGGCTSTTCGGGGTCAACCTTTTGAAGCTTCCTGGTTCGGATGGGGTTGGTGGTGGATGCAATGGGAAGCGGAAAGAGATGGAGCTGTTTGCATTAGAATGTAGCAAGAAGCCAAAGATTATTGGAGCTTTGTAA 1155 0.5463 MEAVTTSTEETATTSDSLSITLSPAKSPPPPPTANNNTADGCGVAAEVESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAVRFRGKDAVTNFKHLTVADGDSDESDDGSETEFLNSHSKSEIVDMLRKHTYEEELRQSKRGGACGGKRHRRGNGDNXDASSFGSEGACXLRAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPIQGNGCAAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLRAGDAVRFYRSAGPDGQLYIDCKARMXXGGVVNSPNEDDNTKNNKRNNGLLIPVGPVVEPVQXVRLFGVNLLKLPGSDGVGGGCNGKRKEMELFALECSKKPKIIGAL* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3251 384 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 5 384 IPR044800 GO:0003700
Amo19g3251 384 SMART rav1_2 57 118 IPR001471 GO:0003700|GO:0006355
Amo19g3251 384 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 5 384 - -
Amo19g3251 384 Pfam B3 DNA binding domain 196 296 IPR003340 GO:0003677
Amo19g3251 384 Gene3D AP2/ERF domain 56 113 IPR036955 GO:0003700|GO:0006355
Amo19g3251 384 ProSiteProfiles B3 DNA-binding domain profile. 196 302 IPR003340 GO:0003677
Amo19g3251 384 SUPERFAMILY DNA-binding pseudobarrel domain 195 298 IPR015300 -
Amo19g3251 384 MobiDBLite consensus disorder prediction 1 23 - -
Amo19g3251 384 MobiDBLite consensus disorder prediction 1 50 - -
Amo19g3251 384 Gene3D - 186 306 IPR015300 -
Amo19g3251 384 SUPERFAMILY DNA-binding domain 56 113 IPR016177 GO:0003677
Amo19g3251 384 ProSiteProfiles AP2/ERF domain profile. 57 112 IPR001471 GO:0003700|GO:0006355
Amo19g3251 384 CDD AP2 56 114 IPR001471 GO:0003700|GO:0006355
Amo19g3251 384 CDD B3_DNA 195 296 IPR003340 GO:0003677
Amo19g3251 384 Pfam AP2 domain 56 104 IPR001471 GO:0003700|GO:0006355
Amo19g3251 384 MobiDBLite consensus disorder prediction 118 137 - -
Amo19g3251 384 MobiDBLite consensus disorder prediction 156 179 - -
Amo19g3251 384 SMART B3_2 196 301 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3251 Amo-Chr19 143560763 143563097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3251 5 383 RAV Transcription Factor Family AT1G13260 53.316 2.05e-126 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Amo19g3251 B3 3.3e-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3251 K09287 - gmx:100789009 469.929