Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3246 ATGGCCGGATCATCGTGGTTGGTAGACAAAAGTAGAATTGCAACCAAAATAAAGAGTGCATCTGGAGCAAGTGGGAAAGTTTTATGGAAAAGCAATCCTACCAGAACTTGTCCGAATTGTCAACATGTTATTGATAACAGTGATGTGGCACAAGAGTGGCCTGGATTACCAAAAGGTGTGAAATTTGATCCATCTGATCAAGAAATAATATCGCACTTGCTTGCAAAAGTTGGTGCAGCAGGTTCAGAGCCTCACCCTTTCATTGATGAATTTATTGCTACTCTTGAAGTGGATGATGGAATTTGTTATACACATCCTAAACATTTACCAGGTGTCAAGCAAGATGGTAGTGCTACACACTTTTTCCACAGATCAATCAAGGCTTATAATACCGGCAATCGAAAGCGTCGGAAAATAAATGACCAGGACTCTGGCGATGTCCGTTGGCACAAGACTGGAAAAACTAAACCTGTCRTCTCGGACGGGGTTCAGAGAGGCTGTAAAAAGATTATGGTTCTATATATGACTTCAGTTAGAGGAGTAAAAGCTGAGAAAACTAACTGGGTTATGCATCAATATCACCTCGGRACAGACGAAGATGAAAAGGAAGGAGAGTATGTTATCTCTAAAGTGTTTTACCAGCAACAAGTTAAGTTTGGTGAAAAAGATGATCATGATGTTCCTGGAACCAATGAAGCAACTGTTGTGAAAGATGATCCAGTCACTTCCAAATCTCTGACTTCGGAACCTCCTCATAGTGAAAAGCAATGTTCAGATCTCGACATAGGAGAAAAAACACATCAGATTCTTCAGGGTCCTCAGACAGATTGTGTAGAAGACATTCAAGTCGAGTGTGAAGAGATTGTAAAAACTGATGTATCCATGGCAGATGCTCAAAATAATGAAGGAATGGATAATGTAGAAAATAATGCTGACGGAGAACAAAAATGGTGGGACAGTGAGTCACAGAATTTGTTAGATTCACAACAACTTGTTGAAGCATTGGCCTTGTGTGATGATCTCCTCCATAGCCAGTGTTCCAATAAGGATGATGAAAATGSAGAACACAAGGAGCACTTGAGTCTTTCCATCTATGCTCATCTAGGACCAGAGCATCTGAAGAAAGATCTTGAAGAGTGCCAAAACCTTAMTCTTGATCCTGCAAACGTAGAGCTCGAGACACCACCTTCAGAGTTTCGACTAAGTCAGCTGGAATTYGGTTCACAGGATAGCTTTGTTTCCTTKAGCGGYGGCAAGGCAGTCGAYTAA 1269 0.409 MAGSSWLVDKSRIATKIKSASGASGKVLWKSNPTRTCPNCQHVIDNSDVAQEWPGLPKGVKFDPSDQEIISHLLAKVGAAGSEPHPFIDEFIATLEVDDGICYTHPKHLPGVKQDGSATHFFHRSIKAYNTGNRKRRKINDQDSGDVRWHKTGKTKPVXSDGVQRGCKKIMVLYMTSVRGVKAEKTNWVMHQYHLGTDEDEKEGEYVISKVFYQQQVKFGEKDDHDVPGTNEATVVKDDPVTSKSLTSEPPHSEKQCSDLDIGEKTHQILQGPQTDCVEDIQVECEEIVKTDVSMADAQNNEGMDNVENNADGEQKWWDSESQNLLDSQQLVEALALCDDLLHSQCSNKDDENXEHKEHLSLSIYAHLGPEHLKKDLEECQNLXLDPANVELETPPSEFRLSQLEFGSQDSFVSXSGGKAVD* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3246 422 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 2 414 - -
Amo19g3246 422 ProSiteProfiles NAC domain profile. 56 214 IPR003441 GO:0003677|GO:0006355
Amo19g3246 422 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 414 IPR044799 GO:0003700
Amo19g3246 422 MobiDBLite consensus disorder prediction 236 253 - -
Amo19g3246 422 SUPERFAMILY NAC domain 41 214 IPR036093 GO:0003677|GO:0006355
Amo19g3246 422 MobiDBLite consensus disorder prediction 222 265 - -
Amo19g3246 422 Pfam No apical meristem (NAM) protein 57 195 IPR003441 GO:0003677|GO:0006355
Amo19g3246 422 Gene3D NAC domain 65 218 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3246 Amo-Chr19 143500882 143504588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3246 33 218 NAC Transcription Factor Family AT1G28470 57.812 1.57e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo19g3246 NAM 4.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3246 - - gmx:100787422 657.136