Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3233 ATGATGCCCCCAGAGCAAGAAAGCAATATTGCACCCAACATTAGTCCTGGTGATGCTGAACCGGTGGAGGGTTGTCCTGTCACCAATAATAACAAAGTTATACCAAGTTTGGATAATAATAATAATAATAATAACAATGATGCCATTCATGATGAACACCATCAACCAACAACAACAGCAGCAGCAGCAACAGCAACAAGATTTTCTATTCTTCAACAATCTTTGCGTCCTATTACCCTAAAATTTGAGGACGTATCATACAGCATAAGCTTCCCAAGGAAAAAGAAGAATGGCTGCTTCTTGCATCAAGAGCCAAAGCACAGAAGGAAAATACTCAGCGGCGTCACCGGCGTCGCTCGTCCCGGGGAGCTAACGGCAATGCTGGGGCCGTCCGGGAGCGGCAAGACAACTCTCTTGACCGCGCTCGCCGGTCGCCTCGACGGAAAAGTTTCCGGCTCCATAACTTACAACGGCCGCCACGACACCGCCGCCGTGAAGCGCAAGATAGGCTTCGTCTCCCAAGACGACGTACTCTACCCTCACCTGACCGTCCAAGAAACCCTAAATTACGCCGCCATGCTGAGGCTCCCGAAGACGCTCACCAAGGAAGAGAAGCTTCAGCATGCAGACGCGATTATCGCGGAACTCGGCCTCACGCGGTGCCGGAACAGTCCCGTCGGCGGCGGAGTGTCGATTATCCGGGGAATCTCCGGAGGAGAGAGGAAAAGAGTGAGTATAGGTCTTGAGATGCTGATAAACCCTAGTTTGTTGTTTCTCGACGAGCCTACGTCGGGGCTGGACTCCACGACGGCTCAGCTGATCGTGTCGGTGGTGCGAGGGCTCGCCCGCGGCGGCCGGACGGTGGTGACGACGATTCACCAGCCGTCGAGCCGGCTTTACAGGATGTTTGATAAGGTGGTGGTGCTTAGCGACGGGCAGCCGATTTATTCCGGTCAATCGGGTCGGGTCATGGAGTATCTTGAATGCATCGGGTATGCGCCAGCTTTCAACTTCGTCAACCCTGCTGATTTCCTTCTTGACCTTGCAAATGGCATAGTTGCTGATGTCAAACATGAGGATAATGTTGAACATCACGAGGATCAAGCATCAATCAAACAGTCCCTAATTTCATCCTACAAGAAGAACTTGTATCCTGCTCTTAAAGAAGAGATTCAACGAAATAATATTGACTCGGTAATATCATCAGGAACACCAAGAAGTTCTGATAATCAATGGAACACAACATGGTGGGAGCAATTGAAGGTGTTACTTAAGAGGGGTTTACAAGAGAGAAGGCATGAATCCTTTTCTGGCCTTCGAATCTTCCAAGTTTTGTCTGTATCCATTCTCTCAGGGCTTCTTTGGTGGCACTGTGATCACTCACACATACAAGATCAGGTTGGACTCCTTTTCTTCTTCTCAATTTTCTGGGGATTCTTCCCTCTCTTCAATGCTATCTTTGCATTTCCTCTGGAGAGGCCAATGCTTGTGAAAGAAAGATCATCAGGAATGTACCATCTGTCCTCATACTACGTGGCACGAATGCTCGGAGACTTGCCAATGGAGCTTGTCCTCCCTACAATCTTTGTAAGCATCAGCTACTGGATGGGAGGACTAAAGCCTTCAGTAGTGACATTTGTGCTAACCCTCTTGATCATGCTTTTCAATGTCCTTGTATCCCAAGGAATAGGCCTAGCACTCGGCGCAATCCTCATGGATGTGAAGCAAGCCACGACTCTAGCCTCAGTGACCATGCTGGTGTTTCTCTTGGCCGGCGGCTACTACATTCAACATATGCCCCCCTTCATAGAATGGTTGAAGTATGTCTCCTTCAGTCACTACTGCTATAAGCTCCTTGTAGGAGTTCAGTATCCAGAAAATGATGTGTATGATTGTGGACATGGCTTGCTTTGTAGAGTAAGAGACTTTCCTGCTATAAAGTGTTTGGGGATTGAAAATTTGTGGGAAGATGTTGCAACATTGACTCTGATGTTAATTGGATACAGAGTTGTCGCATATTTAGCTTTGAGGATGGGGCAGCCTCACTGA 2049 0.4832 MMPPEQESNIAPNISPGDAEPVEGCPVTNNNKVIPSLDNNNNNNNNDAIHDEHHQPTTTAAAATATRFSILQQSLRPITLKFEDVSYSISFPRKKKNGCFLHQEPKHRRKILSGVTGVARPGELTAMLGPSGSGKTTLLTALAGRLDGKVSGSITYNGRHDTAAVKRKIGFVSQDDVLYPHLTVQETLNYAAMLRLPKTLTKEEKLQHADAIIAELGLTRCRNSPVGGGVSIIRGISGGERKRVSIGLEMLINPSLLFLDEPTSGLDSTTAQLIVSVVRGLARGGRTVVTTIHQPSSRLYRMFDKVVVLSDGQPIYSGQSGRVMEYLECIGYAPAFNFVNPADFLLDLANGIVADVKHEDNVEHHEDQASIKQSLISSYKKNLYPALKEEIQRNNIDSVISSGTPRSSDNQWNTTWWEQLKVLLKRGLQERRHESFSGLRIFQVLSVSILSGLLWWHCDHSHIQDQVGLLFFFSIFWGFFPLFNAIFAFPLERPMLVKERSSGMYHLSSYYVARMLGDLPMELVLPTIFVSISYWMGGLKPSVVTFVLTLLIMLFNVLVSQGIGLALGAILMDVKQATTLASVTMLVFLLAGGYYIQHMPPFIEWLKYVSFSHYCYKLLVGVQYPENDVYDCGHGLLCRVRDFPAIKCLGIENLWEDVATLTLMLIGYRVVAYLALRMGQPH* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3233 682 Pfam ABC-2 type transporter 418 624 IPR013525 GO:0016020|GO:0140359
Amo19g3233 682 ProSitePatterns ABC transporters family signature. 236 250 IPR017871 GO:0005524
Amo19g3233 682 MobiDBLite consensus disorder prediction 29 46 - -
Amo19g3233 682 SMART AAA_5 121 313 IPR003593 -
Amo19g3233 682 Pfam ABC-2 type transporter 293 380 IPR043926 GO:0140359
Amo19g3233 682 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 51 679 - -
Amo19g3233 682 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 329 IPR027417 -
Amo19g3233 682 Gene3D - 72 330 IPR027417 -
Amo19g3233 682 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 80 336 IPR003439 GO:0005524
Amo19g3233 682 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 51 679 - -
Amo19g3233 682 Pfam ABC transporter 115 264 IPR003439 GO:0005524
Amo19g3233 682 CDD ABCG_EPDR 77 318 - -
Amo19g3233 682 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3233 Amo-Chr19 143188450 143193321 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3233 119 325 Calmodulin-binding Proteins AT2G36910 26.512 8.55e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3233 K05681 - gmx:100792991 1033.86