Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3232 ATGGCGGCAAGCTCCACAAACAGTGACTGTTCGAGCTTGATGGAAGGCAGAACGGTGACGACAAGAAACGAACGGCGGCGACTATGGGCAACAATCCCTCCTTCGCGAGTTCTCCCTCTCTGCGCGAGCTCTCTCTTCTCGACAGTACAACGGCAACTCTCTCTTCTGGGCTTGATAGTTCGGCGGCGGCGGAACAGGATGGTACCTTGTGATCATCTTCTGGTACTTTCCGTGAAAATGGCAAATCCTAGGGTGTTCTTTGACATGACCATCGGAGGCCAGCCAGCTGGCCGCATCATCATGGAGCTCTTCGCCGACACAACGCCGAGGACCGCCGAGAATTTCCGTGCACTCTGTACCGGTGAGAAGGGAGTTGGCTGCAGCGGGAAGCCCCTCCACTACAAGGGTTCCTCCTTCCACCGTGTCATCCCCAACTTCATGTGCCAGGGTGGTGACTTCACCGCAGGAAACGGCACCGGCGGTGAATCGATCTACGACATCAAGTTTGCTGACGAGAATTTCATCAGGAAGCACACCGGACCGGGTATCCTGTCGATGGCGAATGCGGGTCCAAACACTAACGGATCTCAGTTCTTCATCTGCACCGCAAAGACGGAGTGGTTGGATGGGAAGCACGTTGTGTTCGGGCAAGTGGTCGAGGGCATGGATGTGGTGAGGGAGATCGAGAAGGTTGGGTCCAGCTCTGGCAGGACGTCGAAGCCGGTGGTCGTCGCCGACTGCGGTCAACTGTCTTAG 756 0.5661 MAASSTNSDCSSLMEGRTVTTRNERRRLWATIPPSRVLPLCASSLFSTVQRQLSLLGLIVRRRRNRMVPCDHLLVLSVKMANPRVFFDMTIGGQPAGRIIMELFADTTPRTAENFRALCTGEKGVGCSGKPLHYKGSSFHRVIPNFMCQGGDFTAGNGTGGESIYDIKFADENFIRKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVREIEKVGSSSGRTSKPVVVADCGQLS* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3232 251 Gene3D - 75 251 IPR029000 -
Amo19g3232 251 CDD cyclophilin_ABH_like 83 248 - -
Amo19g3232 251 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 80 251 - -
Amo19g3232 251 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 86 249 IPR002130 GO:0000413|GO:0003755
Amo19g3232 251 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 80 251 - -
Amo19g3232 251 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 134 151 IPR020892 GO:0003755|GO:0006457
Amo19g3232 251 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 86 248 IPR002130 GO:0000413|GO:0003755
Amo19g3232 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 210 225 IPR002130 GO:0000413|GO:0003755
Amo19g3232 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 197 209 IPR002130 GO:0000413|GO:0003755
Amo19g3232 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 103 118 IPR002130 GO:0000413|GO:0003755
Amo19g3232 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 139 151 IPR002130 GO:0000413|GO:0003755
Amo19g3232 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 182 197 IPR002130 GO:0000413|GO:0003755
Amo19g3232 251 SUPERFAMILY Cyclophilin-like 74 250 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3232 Amo-Chr19 143158350 143160808 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3232 97 231 U-box Gene Family AT5G67530 47.794 2.42e-28 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3232 K01802 - pvy:116118183 329.331