LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo19g3232	ATGGCGGCAAGCTCCACAAACAGTGACTGTTCGAGCTTGATGGAAGGCAGAACGGTGACGACAAGAAACGAACGGCGGCGACTATGGGCAACAATCCCTCCTTCGCGAGTTCTCCCTCTCTGCGCGAGCTCTCTCTTCTCGACAGTACAACGGCAACTCTCTCTTCTGGGCTTGATAGTTCGGCGGCGGCGGAACAGGATGGTACCTTGTGATCATCTTCTGGTACTTTCCGTGAAAATGGCAAATCCTAGGGTGTTCTTTGACATGACCATCGGAGGCCAGCCAGCTGGCCGCATCATCATGGAGCTCTTCGCCGACACAACGCCGAGGACCGCCGAGAATTTCCGTGCACTCTGTACCGGTGAGAAGGGAGTTGGCTGCAGCGGGAAGCCCCTCCACTACAAGGGTTCCTCCTTCCACCGTGTCATCCCCAACTTCATGTGCCAGGGTGGTGACTTCACCGCAGGAAACGGCACCGGCGGTGAATCGATCTACGACATCAAGTTTGCTGACGAGAATTTCATCAGGAAGCACACCGGACCGGGTATCCTGTCGATGGCGAATGCGGGTCCAAACACTAACGGATCTCAGTTCTTCATCTGCACCGCAAAGACGGAGTGGTTGGATGGGAAGCACGTTGTGTTCGGGCAAGTGGTCGAGGGCATGGATGTGGTGAGGGAGATCGAGAAGGTTGGGTCCAGCTCTGGCAGGACGTCGAAGCCGGTGGTCGTCGCCGACTGCGGTCAACTGTCTTAG	756	0.5661	MAASSTNSDCSSLMEGRTVTTRNERRRLWATIPPSRVLPLCASSLFSTVQRQLSLLGLIVRRRRNRMVPCDHLLVLSVKMANPRVFFDMTIGGQPAGRIIMELFADTTPRTAENFRALCTGEKGVGCSGKPLHYKGSSFHRVIPNFMCQGGDFTAGNGTGGESIYDIKFADENFIRKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVREIEKVGSSSGRTSKPVVVADCGQLS*	252

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo19g3232	251	Gene3D	-	75	251	IPR029000	-
	Amo19g3232	251	CDD	cyclophilin_ABH_like	83	248	-	-
	Amo19g3232	251	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	80	251	-	-
	Amo19g3232	251	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	86	249	IPR002130	GO:0000413\|GO:0003755
	Amo19g3232	251	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	80	251	-	-
	Amo19g3232	251	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	134	151	IPR020892	GO:0003755\|GO:0006457
	Amo19g3232	251	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	86	248	IPR002130	GO:0000413\|GO:0003755
	Amo19g3232	251	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	210	225	IPR002130	GO:0000413\|GO:0003755
	Amo19g3232	251	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	197	209	IPR002130	GO:0000413\|GO:0003755
	Amo19g3232	251	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	103	118	IPR002130	GO:0000413\|GO:0003755

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo19g3232	Amo-Chr19	143158350	143160808	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo19g3232	97	231	U-box Gene Family	AT5G67530	47.794	2.42e-28	111

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo19g3232	K01802		-	pvy:116118183	329.331

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