Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3228 ATGGCAGAGGTATTTGATATGTTAATGGATGTGAATGCAAGAAAACTTGAATGGAACTTTCAAGTTTATGTTGTTCATCTTTGGGAAGTTCCAAATAGATTCAATGAAAAAGAGATCAATGGCATAGAGATAGTTCTTCAAGATGTTCAGGGTGGAAGGATCCAAGCCTCAATCCCTAAACCTCTACTCAAAAAATGGAGAGGTAAGATTGTTGAGTTCAAGATGTATATCATGACCCATTTCATTGTGGTCGACAAGAAGGAAAAAACCAAGACAACCAACAATAGATGGTCCTTAAGTTTTTCACATAGGACCACGGTTCAGCCAGTTTCTAAACCAAGCTATCCTCTTGAAGCATTTAGCTTTAAGCCCATTCCGGAGTTGCTTGATGCTGACAAGCTGGAAGATTCAGTTCTAATCGGAAAAACGTCAGTGCAGAGTCATTTTGATGTCTCAAAGTTACGTATTAACCCTGATTTGGATGAGGTCAAAGATTTTCGTAACAGGAGGCTTTCTGAAAAGCCGTCTAACTCGACCAGGATAAGTCAAGTTACATCGCATGGTCCACGATCTGTTATTTTTTGGTTAATTTGTTTTCAGGAAGGACCTATATGGATTGCTGGTACTATTGTTTCAATTAATGCTGGAAAGGATGATTGGTTCTATAAATCGTGTCGAAAGTGTCCGAAGAAAGTAGAAACTCCAATTGGCAACAGATATGAGTGTGGCAAGTGTGGCCACACTCATGCAAGTGCATCACTTAGGTTTAAGGTTGAGGTATTAGTATATGATGGAACTGGGAGCATCATGTTGCTGATGTGGGATAGGGAGACGGCGCAGCTGTGTGGGAGGCAAGCTGAGCAGATCAAGGATGAGGAAAGTAGTGATGGAGAAGGTTATCCTCCTACATTGGATAGCATGATGGATAGGCGGTTACTCTTCAAAATAAATGTCAAAGCATCGAACATGAAGCAATATGACCATGTTTACACAGTGATGAAAATATGTGATGATGAAGATATTGTGGAGATGAATCACCCCAAACCAGTACAAAACAATGCTTCTGCTAATCTAATTGAGACCGGGTGCAGTGACTCGATTGGTATATCAGCAGTGGTGGTTAATATGCATAATGATACTGAATCTATGGTTTCTTTGTGTCACAAGCCTGAAGTCCAAAACACCTGCAAAAAGAGCTCCCATGGGGCTGAAGCAGTCCGTGCATGTTAA 1230 0.4073 MAEVFDMLMDVNARKLEWNFQVYVVHLWEVPNRFNEKEINGIEIVLQDVQGGRIQASIPKPLLKKWRGKIVEFKMYIMTHFIVVDKKEKTKTTNNRWSLSFSHRTTVQPVSKPSYPLEAFSFKPIPELLDADKLEDSVLIGKTSVQSHFDVSKLRINPDLDEVKDFRNRRLSEKPSNSTRISQVTSHGPRSVIFWLICFQEGPIWIAGTIVSINAGKDDWFYKSCRKCPKKVETPIGNRYECGKCGHTHASASLRFKVEVLVYDGTGSIMLLMWDRETAQLCGRQAEQIKDEESSDGEGYPPTLDSMMDRRLLFKINVKASNMKQYDHVYTVMKICDDEDIVEMNHPKPVQNNASANLIETGCSDSIGISAVVVNMHNDTESMVSLCHKPEVQNTCKKSSHGAEAVRAC* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3228 409 CDD RPA1_DBD_A_like 21 107 - -
Amo19g3228 409 Pfam Domain of unknown function DUF223 43 121 IPR003871 -
Amo19g3228 409 Gene3D - 172 345 IPR012340 -
Amo19g3228 409 Pfam Replication factor-A C terminal domain 207 335 IPR013955 -
Amo19g3228 409 CDD RPA1_DBD_C 201 335 IPR013955 -
Amo19g3228 409 SUPERFAMILY Nucleic acid-binding proteins 204 339 IPR012340 -
Amo19g3228 409 PANTHER REPLICATION FACTOR A 1, RFA1 210 359 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo19g3228 409 PANTHER REPLICATION FACTOR A 1, RFA1 8 129 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo19g3228 409 PANTHER BNAC01G35430D PROTEIN 210 359 - -
Amo19g3228 409 PANTHER BNAC01G35430D PROTEIN 8 129 - -
Amo19g3228 409 SUPERFAMILY Nucleic acid-binding proteins 11 111 IPR012340 -
Amo19g3228 409 Gene3D - 7 112 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3228 Amo-Chr19 142980450 142982861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3228 221 298 Core DNA Replication Machinery Family AT5G08020 32.051 5.07e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3228 - - aip:107633426 409.838