Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3220 ATGGCTGCTGCTTCATCAACACCATTCTTGGGAGTCAGAGAAGAAAGTCAAAGCCAGATTGCACATCAATCCTCCATAGCTGCCTCCTCAGCTTCTACTCCTCCCGCTGTTCCTCAGAAGAAACGAAGGAATCAGCCTGGAACACCAAATCCAGATGCAGAAGTGATAGCACTATCGCCAAAGACACTAATGGCAACAAACAGGTTCATATGCGAGGTATGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTACACAGAAGAGGACACAACCTACCATGGAAGCTGAAGCAGAAGACGAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGCCCCGAACCCACGTGTGTCCACCACGACCCTTCCAGGGCCTTGGGAGACCTCACTGGGATCAAGAAGCATTACTCTCGCAAGCATGGCGAGAAGAAGTGGAAGTGTGACAAGTGTTCTAAGAAATATGCTGTTCAATCCGATTGGAAGGCTCATTCTAAAACTTGCGGAACCAGAGAGTATAGATGCGATTGTGGCACTCTCTTCTCTAGACGTGACAGTTTCATCACTCATAGGGCCTTCTGTGATGCCCTAGCTCAAGAAAGTGCAAGGCACCCTAATGGCACCATGAACCCTTTGGGAGGGACACATTTGTATGCCACAAACACAAACCACATGACCTTAGGCCTCTCCCAATTAGGCACCCAAATCTCCCAATTCCAGAATCACCAAAGTGGCGCCACTCACAGCAGTGGCGGCGGCGGCATCCTCCGTCTCGGAAGCGCCGGGGCAGCCAAATTCGAGCACTTAATCCCGCCTTTAAGCCATCAGTCTTCATCATTTGGACACTCACCCCAATCATCACTCACTAATCCCTCACCTTTCTTCATCAATGACCCAAATCAAGCATTTGAAGACAACAACCAAACTCATCAACAAGGTTCATTATTCTCAAGCAAGCAATTACATGGTCTAATGCAACTTCCTGATCTTCAAGGAAACACCACCAACACCAACTCTAATAATTCTTCCAATCTTTTCAACCTTAGCTTCTTCCCAAACAACAACAATAGCAGTGGAACCATCATCCCTGACCAATTCAATAGTAACCAACAAGGAACAACAACATCAACACTCTACGGTGACCAAGTTGGTTCAGGTTTGTCTTCACTCTTTGGAAATTCATCTTCATTGCAACATGAGAACGTGTCCCCTCATATGTCAGCCACTGCATTGCTTCAGAAAGCTGCACAAATGGGTCCAACTACCACCACCAACAATAATAATGGTTCTTCTATCCTTAGAGGAATGTGTAGTAGTTCCTCAAACAAATCCGAAAGGGAACTTGTTGTGTCTGATCATGTTGCATTTGGAAGTGATCAAAGAAGATCAAGCATGGAAAATGATCATCACCACCAGCAACACCTTCATGGGTTGATGAACTCCATTGCCAGTAATGTAGGAAGCACTACTACTAGTTCCATATTTGACAATGTGCATCAAGGGAATGATGATAACAACAACAACCTCAGTCATCATCATCATCATCATCATCAGTTTCATCAGAGCTTAGAGGATTCTAGTAACACTAATAAGCTTCCTCAGAATCATCTTGGGGTCAGTTTTGGAGGGTCTGATAAGTTGACATTGGATTTTCTTGGAGTTGGAGGAATGGTAAGAAATATCAACACTGGTGCAACAACACATGCATTTTCACAAACACATAGAGAGCAACAACAACAAGGAATGATGAGTACCTTGAGTTCTTTGGATTCGGACCTGAAATCAGCACAATCAGCCACACCAAGCCACCGTTTTTGA 1815 0.4485 MAAASSTPFLGVREESQSQIAHQSSIAASSASTPPAVPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPNGTMNPLGGTHLYATNTNHMTLGLSQLGTQISQFQNHQSGATHSSGGGGILRLGSAGAAKFEHLIPPLSHQSSSFGHSPQSSLTNPSPFFINDPNQAFEDNNQTHQQGSLFSSKQLHGLMQLPDLQGNTTNTNSNNSSNLFNLSFFPNNNNSSGTIIPDQFNSNQQGTTTSTLYGDQVGSGLSSLFGNSSSLQHENVSPHMSATALLQKAAQMGPTTTTNNNNGSSILRGMCSSSSNKSERELVVSDHVAFGSDQRRSSMENDHHHQQHLHGLMNSIASNVGSTTTSSIFDNVHQGNDDNNNNLSHHHHHHHQFHQSLEDSSNTNKLPQNHLGVSFGGSDKLTLDFLGVGGMVRNINTGATTHAFSQTHREQQQQGMMSTLSSLDSDLKSAQSATPSHRF* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3220 604 Gene3D Classic Zinc Finger 48 117 - -
Amo19g3220 604 MobiDBLite consensus disorder prediction 490 538 - -
Amo19g3220 604 SUPERFAMILY beta-beta-alpha zinc fingers 68 165 IPR036236 -
Amo19g3220 604 MobiDBLite consensus disorder prediction 490 504 - -
Amo19g3220 604 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 2 567 - -
Amo19g3220 604 MobiDBLite consensus disorder prediction 522 536 - -
Amo19g3220 604 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Amo19g3220 604 Pfam Zinc-finger double-stranded RNA-binding 69 91 IPR022755 -
Amo19g3220 604 MobiDBLite consensus disorder prediction 573 604 - -
Amo19g3220 604 SMART c2h2final6 145 165 IPR013087 -
Amo19g3220 604 SMART c2h2final6 110 140 IPR013087 -
Amo19g3220 604 SMART c2h2final6 69 91 IPR013087 -
Amo19g3220 604 MobiDBLite consensus disorder prediction 274 297 - -
Amo19g3220 604 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 2 567 - -
Amo19g3220 604 MobiDBLite consensus disorder prediction 1 53 - -
Amo19g3220 604 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Amo19g3220 604 MobiDBLite consensus disorder prediction 10 46 - -
Amo19g3220 604 Gene3D Classic Zinc Finger 123 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3220 Amo-Chr19 142869634 142874635 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3220 64 561 C2H2 Transcription Factor Family AT2G02080 46.154 4.91e-118 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo19g3220 zf-C2H2_jaz 3.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3220 K25870 - gmx:102663407 596.275