Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3213 ATGGCTGAAGGATGTGGTGGAAACTCAGTTGCAACCACTTCTCCTGCTTCATTCAATTGGTGGTACCTCCATGCAAATCATGCTACTAATACTAACGCATATAATAATAATAATAATAATTCTTCATCATGTTCTTGTGAGGAGGATATATCTGTTTCAACATCTTTCACTAATGCCTCCAACCATTCAACCCTCACTGTTGATTCTTCCCGAAGGCTTCTTCATCCTTCCTCCAACAACAACCACTTCTTGCCCGAACATGCTGACGATAATCATCTTTGGAATCATGTTCTTTCAGCTGTTGGATCAAACGGGGAGTTACACAACAATGAAGAAATGGGAGAAATGAAGTTTCTGGATGCATTATCATCTAAGAACATGACAAGCTCTATGTTTGAAGAACCGGCATGTGACTACTTGAAGAAACTTGACACCACTACTAGTTGGGAATATAGTGGTGGATCAACTTCTTCATCATTCAACAACAGTTTTGAGAAGCACTTGAATAATAATAATAATAATAATGGGTTCAGTGATGATGCATTGATTGAGAATAATGAAAGGTTGACTAAGTTATCTAATCTTGTTAGCACTTGGTCTATTGCCCCACCTGACCCTGAAGTTAGTAGTAGCCACTTTGATCATCCACCAACAAATATTAATAATCATCATCATCATGACCCTAATTGTAATTTCAAGCAACAAGTTTTTATTGGAGATTCCACATCATACCCTCCAATCAGTAGCTATGATCATCCCACAAAGGTGAAGGAAGAATTTCATCATCATCATCAAACAAATAGTGGATTTCAAAATGGATTAATTAATGGTCTTTCTTCAGTGATGGGAGGAGGAGATGATAGTGGTAATAAATTTTACCATGGTTTGCCAAACCTTTCTTCATGCACAAGAAACATCTCAGATGTTATTTCCTTTAATAGTAGGCTTGGGAGGCCAGTTCTTGGAATCCATGCACAAAAGCCTAATATCAAATACATCAATAATTTATCTGAATCAAAGAAGCACCAAGGTCTTCAAACAACATCCCCGATAAATAGAAGTAATAATGGAAGAGTAGAGGGGACAACAGCTCGTGAAATAAAGAAGAAAAGATCTGAAGAATCTTCAGAAGCAATTTTGAAGAAGCCTAAGCAAGATACATCCACAGCTTCTTCTACAAAGGTGCAAGCACCCAAAGTCAAGCTGGGGGACAAGATCACAGCCCTTCAACAAATTGTGTCTCCATTTGGAAAGACAGACACAGCTTCGGTGCTGTTTGAAGCAATTGGGTACATAAAGTTTCTTCAAGAACAAGTCCAGCTACTAAGCAACCCTTACTTGAAGTCTAATTCCCACAAGGATCCATGGGGAAGCTTGGATAGAAAAGATCACCACAAGGAGGATGCAAAATTAGACCTTAGGACTAGAGGACTTTGTTTAGTTCCAACTTCATGTACTCCTCTTATTTACAGAGAGAACAGTGGACCAGATTATTGGACACCAGCATACAGAGGATGTTTGTATAGGTGA 1530 0.3856 MAEGCGGNSVATTSPASFNWWYLHANHATNTNAYNNNNNNSSSCSCEEDISVSTSFTNASNHSTLTVDSSRRLLHPSSNNNHFLPEHADDNHLWNHVLSAVGSNGELHNNEEMGEMKFLDALSSKNMTSSMFEEPACDYLKKLDTTTSWEYSGGSTSSSFNNSFEKHLNNNNNNNGFSDDALIENNERLTKLSNLVSTWSIAPPDPEVSSSHFDHPPTNINNHHHHDPNCNFKQQVFIGDSTSYPPISSYDHPTKVKEEFHHHHQTNSGFQNGLINGLSSVMGGGDDSGNKFYHGLPNLSSCTRNISDVISFNSRLGRPVLGIHAQKPNIKYINNLSESKKHQGLQTTSPINRSNNGRVEGTTAREIKKKRSEESSEAILKKPKQDTSTASSTKVQAPKVKLGDKITALQQIVSPFGKTDTASVLFEAIGYIKFLQEQVQLLSNPYLKSNSHKDPWGSLDRKDHHKEDAKLDLRTRGLCLVPTSCTPLIYRENSGPDYWTPAYRGCLYR* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3213 509 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 401 451 IPR036638 GO:0046983
Amo19g3213 509 MobiDBLite consensus disorder prediction 342 361 - -
Amo19g3213 509 MobiDBLite consensus disorder prediction 362 381 - -
Amo19g3213 509 CDD bHLH_AtbHLH_like 401 443 IPR045239 -
Amo19g3213 509 PANTHER TRANSCRIPTION FACTOR BHLH111 21 495 - -
Amo19g3213 509 MobiDBLite consensus disorder prediction 342 397 - -
Amo19g3213 509 Gene3D - 399 454 IPR036638 GO:0046983
Amo19g3213 509 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 386 435 IPR011598 GO:0046983
Amo19g3213 509 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 21 495 - -
Amo19g3213 509 MobiDBLite consensus disorder prediction 382 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3213 Amo-Chr19 142724677 142729425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3213 24 509 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 34.747 1.01e-50 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3213 - - gmx:100527800 595.504