Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3209 TCTCTCCCCAGTCCCCATCCACCCCTACCTTGTGATCATCTTCTAGTGCTTTCTGTGAAAATGGCAAATCCTAGGGTGTTCTTTGACATGACCATCGGAGGCCAGCCAGCTGGCCGCATCATCATGGAGCTCTTCGCCGACACAACGCCGAGGACCGCCGAGAACTTCCGTGCACTATGTACCGGTGAGAAGGGAGTTGGCCGCAGCGGGAAGCCCCTCCACTACAAGGGCTCCTCCTTCCACCGTGTCATCCCCAACTTCATGTGCCAGGGTGGTGACTTCACCGCAGGAAACGGCACCGGCGGCGAATCAATTTATGGCAGCAAGTTCGCTGACGAGAATTTCATCAAGAAGCACACCGGACCGGGTATCCTGTCGATGGCGAATGCGGGTCAGAACACTAACGGATCTCAGTTCTTCATTTGCACCGCGAAGACAGAGTGGTTGGATGGGAAGCATGTTGTGTTCGGGCAGGTTGTCGAGGGCCTGGATGTCGTGAGGGAGATCGAGAAGGTTGGGTCCAGCTCTGGCAGGACGTCGAAGCCAGTGGTCGTCGCTGACTGCGGTCAACTGTCTTAG 579 0.5665 SLPSPHPPLPCDHLLVLSVKMANPRVFFDMTIGGQPAGRIIMELFADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSSFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFADENFIKKHTGPGILSMANAGQNTNGSQFFICTAKTEWLDGKHVVFGQVVEGLDVVREIEKVGSSSGRTSKPVVVADCGQLS* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3209 192 PIRSF Peptidylpro_ismrse 14 192 IPR024936 GO:0003755
Amo19g3209 192 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 75 92 IPR020892 GO:0003755|GO:0006457
Amo19g3209 192 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 21 192 - -
Amo19g3209 192 SUPERFAMILY Cyclophilin-like 15 191 IPR029000 -
Amo19g3209 192 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 44 59 IPR002130 GO:0000413|GO:0003755
Amo19g3209 192 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 138 150 IPR002130 GO:0000413|GO:0003755
Amo19g3209 192 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 151 166 IPR002130 GO:0000413|GO:0003755
Amo19g3209 192 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 123 138 IPR002130 GO:0000413|GO:0003755
Amo19g3209 192 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 80 92 IPR002130 GO:0000413|GO:0003755
Amo19g3209 192 CDD cyclophilin_ABH_like 24 189 - -
Amo19g3209 192 Gene3D - 16 192 IPR029000 -
Amo19g3209 192 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 27 190 IPR002130 GO:0000413|GO:0003755
Amo19g3209 192 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP18-3-RELATED 21 192 - -
Amo19g3209 192 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 27 189 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3209 Amo-Chr19 142635986 142638438 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3209 38 172 U-box Gene Family AT5G67530 48.529 8.84e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3209 K01802 - pvy:116118183 334.724