Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3190 ATGAAACCTGTAATTATAAAAATGTTCATATCAATAACCATGGAGATAGAAACAGAAGGAAGTGGTGATGAAATGAAGAATTCATCATGTTCCGCACTTGATTTATATAGTAAGGCTGTGGTGGTGGAGGAGAATGGGAATCATAGTGGCGGAGGGAATGGGAATTTGAGCTTGAGTGGCGGTGTCAATGGTGGAGATCAGAAAGGGAAGAAGAAAGGAATGCCGGCAAAGAATCTCATGGCCGAGAGGCAGTCTGTTGTGCCAAAGATTAGCAAGATGGATAGGGCTTCGATACTTGGGGATGCAATCGACTACTTGAGGGAGTTACTACAGTGGATTAATGATCTTTACAATGAACTGGAGTCAACTCCACCTGGCCCTTCGCTGCAATCTTCCACCACCAGCCTTCAACCTTTGACACCCACGCCGCAAACCCTTCCATGCCGGGTGAAGGAAGAACTGTATCCTGGTGTCTTGCCAAGCCCCAAAAATCAACTTGCAAAGAGACTCTTTGCCATCATATATCATGCTGAGATAGTTTGCCTTAGGAGAACTGTCCTAGATGAGAAGCTTAAATGCAAGGAATACTCTACTGCAGCATTGATTGGGACCTTGCTTTACCAAAATTTTCAGGATGGGCTTATTGACTTCCTGAAGACGATCCATCTATTGATTTCTTTGAAGGTTACACAGAAGTGGCAACTTCTTAGGAACATTGAGAGTTTGTATGCTTGTGGAGGTGTGAATTTGTAG 753 0.4382 MKPVIIKMFISITMEIETEGSGDEMKNSSCSALDLYSKAVVVEENGNHSGGGNGNLSLSGGVNGGDQKGKKKGMPAKNLMAERQSVVPKISKMDRASILGDAIDYLRELLQWINDLYNELESTPPGPSLQSSTTSLQPLTPTPQTLPCRVKEELYPGVLPSPKNQLAKRLFAIIYHAEIVCLRRTVLDEKLKCKEYSTAALIGTLLYQNFQDGLIDFLKTIHLLISLKVTQKWQLLRNIESLYACGGVNL* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3190 250 MobiDBLite consensus disorder prediction 123 142 - -
Amo19g3190 250 Pfam DNA replication factor Dna2 179 246 IPR014808 -
Amo19g3190 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 84 130 IPR036638 GO:0046983
Amo19g3190 250 PANTHER BHLH TRANSCRIPTIONAL FACTOR 19 168 - -
Amo19g3190 250 MobiDBLite consensus disorder prediction 46 75 - -
Amo19g3190 250 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 19 168 - -
Amo19g3190 250 MobiDBLite consensus disorder prediction 48 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3190 Amo-Chr19 142184100 142188959 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3190 19 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 53.061 5.28e-41 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3190 - - aip:107647300 180.644