Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3174 ATGACGAACCCTAATCTTTTTCCACCGTTCATCTCACGCCATTGTCCTTCACCTCACGTCGCTGCCAATTATTTCCTCGCTATCATTTATCCTCTCATCGCTTCTCATCTCCTCGCCGCTGCAAGAAACGCTATTGTTGCTTCCTTCATCGAGCTTCTATCTGGTTCTCGATCTGGCTTCGATCTGAATATTTGTTGCTGCCGCTTAATTCACCGCCATCGTTCATCTCCCTGCCGCTGCTCATCCCCTCGCGACACCTATCAACATCGTGCCGCTGCCTTCAATGAGCTTCTACGATCTTGTTCTGGCTTCGATCTGAAGGTTAGCCATCGCCTATCATCTCCTTGCTGCTTTCGAGCTTCTGTGATTTGGTGCCGCCTTCTCTGTAACTTCCGCGATTACGTCCTCGCTCTCACCGTCGAGAACTTCCTTGAGCACCGCCTCCAGACTTTCGTCTTCAAGTTCGGCGTGGCCAAGTCAATCCACCACGCCATGGTCCTCATTCGCCAGCGCCACATAGCTTCATCAAGATTTGCCAATAATAACAATAATGATGATGCACTAGTTCTAGCAACTAAGAATATCAATAGGCCTAGCATGGTGGTGAATGTGAAGGTCTTGAAGAAGCTCTTCTCTGTTAACAACTTTCAAAAGAAACCAAGAAGGAGATTGGAGGATGGCTGGCTATACTTTCTGTTTCTGACCGAAATGATCGATCCTGAGCCTATGGAAAAGCCCCCTCCATTGCTGTCCAAGCAGGGGTATGATGCTGCTCTAGTGAAGAAGCTCATGTACTTGTACCTCCTTCATTATTCTGAAAATATTCGAATACAGGTCAAGAGTGGGAACAAAGTTTCGGATTATTCTAATGCATCATTGAAAAATTATGCAGTATGGGCTAACTCAGCGGTGTGTTGTGTTTTATTTTCGGAGCTTAAGGCTTTGCTTCATACTGTTCCGGAAGTTGCACGATTGATTGGGGCTAAAAATACAGACCTGGTCTTACGAACCACATTCACACACCTAATGTCAGCTAATAAAGAGAGAGTCACTGAAGCAGTAAATAGTTTGAAATTTCGTCTCCATGATGAAAGCAAGGATATATCTGAACAATTTAATCATACAAACAGTCTGAAGCTGATTGCTAGAGCTCATCTGGCTATTCGGCATCCTGCCAGTGGATATGTACAGGGGATAAATGATCTTGTTACACCATTTTTAGTCGTTTTCCTATCAGAACACTTGCAAGGGGTATCGATAATTGGTCAATGTTTGATCTATCTGCAGAGAAAATTTCTAATAGAGGCTGATTGCTATTGGTGCTTGTCCAGGTTACAACTGCAGATGAGTACATGTTTAGCGTCCAAAGAATCCCAGAAGTACATGTTTAGCGTCCAAAGAATCCCAGAAGGTAGAAGTGGCAATTGGAATAATCAGAAGAAGTAG 1446 0.4426 MTNPNLFPPFISRHCPSPHVAANYFLAIIYPLIASHLLAAARNAIVASFIELLSGSRSGFDLNICCCRLIHRHRSSPCRCSSPRDTYQHRAAAFNELLRSCSGFDLKVSHRLSSPCCFRASVIWCRLLCNFRDYVLALTVENFLEHRLQTFVFKFGVAKSIHHAMVLIRQRHIASSRFANNNNNDDALVLATKNINRPSMVVNVKVLKKLFSVNNFQKKPRRRLEDGWLYFLFLTEMIDPEPMEKPPPLLSKQGYDAALVKKLMYLYLLHYSENIRIQVKSGNKVSDYSNASLKNYAVWANSAVCCVLFSELKALLHTVPEVARLIGAKNTDLVLRTTFTHLMSANKERVTEAVNSLKFRLHDESKDISEQFNHTNSLKLIARAHLAIRHPASGYVQGINDLVTPFLVVFLSEHLQGVSIIGQCLIYLQRKFLIEADCYWCLSRLQLQMSTCLASKESQKYMFSVQRIPEGRSGNWNNQKK* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3174 481 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 334 452 - -
Amo19g3174 481 PANTHER GTPASE-ACTIVATING PROTEIN GYP1-LIKE 386 465 - -
Amo19g3174 481 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 386 465 - -
Amo19g3174 481 SUPERFAMILY Alpha-L RNA-binding motif 130 173 - -
Amo19g3174 481 Pfam Rab-GTPase-TBC domain 386 455 IPR000195 -
Amo19g3174 481 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 386 452 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3174 Amo-Chr19 141654888 141658949 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3174 133 177 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 82.222 1.04e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3174 K20360 - aip:107643557 220.705