Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3114 ATGGGTGGTGGGAGTGAGAAGAACTCCAAGGCCATGATGGTTGTGGCGCGTTTGGCTGAGTCCATAAAGGAGGTTTCAGGGCTTCCAGAGTGCAACAACGTTTGCAAGAGGATTTATGGGAATCTGGTTAGGAGGGTGAAGCTTTTGAGCCCTCTCTTTGAAGAATTGAAGGACAGTGATGATGAGTCCCTCCTCAGTGATGAACAAGTTGCAGCTTTTGAGTGTCTCAACGTTGCATTGGATTCAGCTAAGACCCTTCTTAACTCTGTGAACCATGGGAGTAAACTTTATCAGGCTTTGCAGAGGAATGATACAATAGCTAAGTTCCAACAAATAACTGAAAAAATTGAAGAGGCATTGTGTGGAATTTCCTACGACAAACTTGAGATATCGGAGGAAGTTCAGGAACAGATTGAACTGGTGCATGCTCAATTCAAAAGAGCCAAAAATCCTACAGAATTTGCTGATTTACAACTAGATTTGGATATGGAAGTAGCACAGAAAGAAAAAGACCCTGATCCTGCTGTCTTCAAAAGACTTTCCGACAAGTTGCATTTGAGGACTATAAATGATCTGAAGAAAGAGTCTGCTGAGTTACACGAATTGGTTATCACAAGTGGTGGGGAACCAGGAGAATATTTTGAGACAATAACATCCCTTCTTAGGAAACTGAAGGACTGCGTATTAACCGAAAATCCCGAGGTTGATAACAATGATGATGGAAAAGTGCCAATTAAGCACAGGTCTCCGGTAATCCCAGATGATTTTCGATGTCCTATATCTCTTGAACTGATGAAAGATCCTGTAATTGTCTCTACTGGTCAGACATATGAAAGATCATGCATTCAGAAATGGCTTGATGCTGGTCACAAAACCTGCCCCAAGACGCAGCAGACACTTTTGCATACTGCCCTTACCCCTAACTATGTTTTGAAGAGTTTGATCGCTTTATGGTGCGAAAGCAATGGTGTTGAGCTACCGAAGAAGCAGGGGAGCTGTAGAGCAAAGAAATCCGGAAGCAATCATTCGGATTGTGACAGAACTGCTATTAACACATTATTGGATAAACTAGCAAACGGTGATATGGAGCAGCAGAGAGCAGCTGCTGGTGAACTCCGGTTGCTGGCTAAAAGGAATGCAGATAACCGAGTGTGTATTGCCGAGGCAGGAGCAATACCACTTCTTGTGGAATTGTTGTCTTCTTCGGATCCTCGAACGCAGGAGCATGCTGTTACAGCACTTCTTAATCTTTCAATCAATGAGAGCAACAAAGGAACTATAGTAAATGCAGGAGCTATACCGGATATCGTAGATGTACTGAAAAGTGGCAGCATGGAGGCTAGAGAAAACGCAGCTGCAACACTCTTTAGCTTATCCGTTCTAGATGAGAACAAGGTTGCAATAGGAGCAGCTGGAGCTATCCCAGTTCTTATAAAGTTACTTTGCGAAGGTACTCCGAGAGGTAAGAAGGATGCGGCTACTGCGATCTTTAATCTTTCCATCTATCAAGGAAACAAAGCAAGAGCCATCAAAGCCGGTATAGTAGCCCCATTAATGCGATTTTTGAAGGATGCCGGGGGTGGTATGGTAGACGAAGCACTAGCTATAATGGCAATCCTTGCAAGCCACCATGAAGGAAGGATAGCAATCGGTCAGGCTGAGCCAATCCCTATTCTAGTGGAGGTTATACGAACCGGGTCTCCACGCAACAGGGAGAATGCCGTGGCCGTATTGTGGTCGCTTTGCACGGGAGATCTAATGCAATTGAAACTAGCAAAGGAACTTGGCGCAGAAGAAGTGTTACACGAATTATCTGAAAATGGCACAGATAGAGCCAAGAGAAAAGCAGGAAGCATATTAGAAGTCTTACAGCGGATTGAAGGGGATCAGAATGTGCAAAGTTCTTAG 1908 0.4408 MGGGSEKNSKAMMVVARLAESIKEVSGLPECNNVCKRIYGNLVRRVKLLSPLFEELKDSDDESLLSDEQVAAFECLNVALDSAKTLLNSVNHGSKLYQALQRNDTIAKFQQITEKIEEALCGISYDKLEISEEVQEQIELVHAQFKRAKNPTEFADLQLDLDMEVAQKEKDPDPAVFKRLSDKLHLRTINDLKKESAELHELVITSGGEPGEYFETITSLLRKLKDCVLTENPEVDNNDDGKVPIKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCESNGVELPKKQGSCRAKKSGSNHSDCDRTAINTLLDKLANGDMEQQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSSDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKSGSMEARENAAATLFSLSVLDENKVAIGAAGAIPVLIKLLCEGTPRGKKDAATAIFNLSIYQGNKARAIKAGIVAPLMRFLKDAGGGMVDEALAIMAILASHHEGRIAIGQAEPIPILVEVIRTGSPRNRENAVAVLWSLCTGDLMQLKLAKELGAEEVLHELSENGTDRAKRKAGSILEVLQRIEGDQNVQSS* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3114 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 325 IPR013083 -
Amo19g3114 635 SUPERFAMILY ARM repeat 347 623 IPR016024 -
Amo19g3114 635 Pfam Armadillo/beta-catenin-like repeat 462 500 IPR000225 GO:0005515
Amo19g3114 635 Pfam Armadillo/beta-catenin-like repeat 379 418 IPR000225 GO:0005515
Amo19g3114 635 SMART Ubox_2 255 318 IPR003613 GO:0004842|GO:0016567
Amo19g3114 635 ProSiteProfiles U-box domain profile. 251 325 IPR003613 GO:0004842|GO:0016567
Amo19g3114 635 Gene3D - 333 460 IPR011989 -
Amo19g3114 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
Amo19g3114 635 SUPERFAMILY RING/U-box 251 327 - -
Amo19g3114 635 Gene3D - 8 125 IPR036537 GO:0007166
Amo19g3114 635 CDD RING-Ubox_PUB 256 298 IPR045210 -
Amo19g3114 635 Pfam U-box domain 252 322 IPR003613 GO:0004842|GO:0016567
Amo19g3114 635 PANTHER U BOX DOMAIN-CONTAINING 15 627 - -
Amo19g3114 635 Gene3D - 461 624 IPR011989 -
Amo19g3114 635 SMART arm_5 461 501 IPR000225 GO:0005515
Amo19g3114 635 SMART arm_5 543 583 IPR000225 GO:0005515
Amo19g3114 635 SMART arm_5 420 460 IPR000225 GO:0005515
Amo19g3114 635 SMART arm_5 502 542 IPR000225 GO:0005515
Amo19g3114 635 SMART arm_5 379 419 IPR000225 GO:0005515
Amo19g3114 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 390 432 IPR000225 GO:0005515
Amo19g3114 635 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 15 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3114 Amo-Chr19 140153296 140156735 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3114 14 628 U-box Gene Family AT3G54850 66.071 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3114 - - gmx:100777452 1010.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3114 19 140153296 140156735 Amo19g3114 19 140153296 140156735 ECH