Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3059 ATGAAACAGGAGATAGATCATAATCAGCATCAAGGGGAGTGTTCTTATTCTTCATCTTCTTACCAACAAGCCAACTTCTTCAACAATATGATGCATCAACACAACATGATGATGATGAGTAGTGATGACATGATCTTTGGAGGAGGAAGAGGCTTCATCAACAACAACAATATGAACATGATGAACATGAACATGTTGTCTTCTTCTGATCAAATGATGATGCATCAGCAGCAGCAACCATGGTCCATGCCATCAATACAAGAACTACCCTTCAACAACCATGAATCTTCTTCTTCGTTTATTGTGCCTCCACAACAACAACAACAAGCTTCACCATATGCAAGCTTCTTCAACAGTAGAAGGGTTCATCCATCATCATCTTCCATGCAGTTTGCAGCAGCATATCATCATCATCATGAGGGTGCTACTTCATCATTTGATCTGCAAGCTGAACTGAGCAAGATGACTGCTCAGGAAATCATGGAGGCTAAGGCTCTTGCTGCTTCCAAAAGCCACAGTGAAGCTGAGAGGAGGCGTAGAGAGAGGATCAATAATCATCTTTCTAAGCTCAGAAGCTTGTTGCCTAGCACCACCAAAACAGATAAAGCATCATTGCTAGCAGAAGTGATTCAACATGTGAAGGAACTGAAACGGCAAACATTAATGATCGCAGAGACGAGTTCAGTTCCAACAGAATCCGACGAGCTCACTGTGGACGATGCATCTGATGAAGATGGCAAATTGGTAATTAAAGCCTCTTTGTGCTGCGAAGATAGGTCCGATCTCTTGCCTGAACTCATCAAAACCTTGAAATCAATGAAGCTTCGAACCCTCAAAGCAGATATCACTACACTCGGTGGCCGTGTCAAGAACGTCTTGTTCATCACCGCTGAACAAGATTACTACTCATCATCAACCGCCAATGAGGATCATCATCATCAACATGACCATAATAATAATAATAATAGTTACGAATACTGCATTAGTTCAATACAGGAAGCTTTGAAGGCAGTTATGGAGAAAAGTAATGGCGGTGTTGGGAATGAGCCTGGTTCTTCTTCTGCAAGTGTCAAGAGACAAAGGACTAATATCATATCCTCCATATCTTAG 1110 0.4171 MKQEIDHNQHQGECSYSSSSYQQANFFNNMMHQHNMMMMSSDDMIFGGGRGFINNNNMNMMNMNMLSSSDQMMMHQQQQPWSMPSIQELPFNNHESSSSFIVPPQQQQQASPYASFFNSRRVHPSSSSMQFAAAYHHHHEGATSSFDLQAELSKMTAQEIMEAKALAASKSHSEAERRRRERINNHLSKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTLMIAETSSVPTESDELTVDDASDEDGKLVIKASLCCEDRSDLLPELIKTLKSMKLRTLKADITTLGGRVKNVLFITAEQDYYSSSTANEDHHHQHDHNNNNNSYEYCISSIQEALKAVMEKSNGGVGNEPGSSSASVKRQRTNIISSIS* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3059 369 Gene3D - 161 225 IPR036638 GO:0046983
Amo19g3059 369 MobiDBLite consensus disorder prediction 341 369 - -
Amo19g3059 369 SMART finulus 173 222 IPR011598 GO:0046983
Amo19g3059 369 Pfam Helix-loop-helix DNA-binding domain 170 216 IPR011598 GO:0046983
Amo19g3059 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 223 IPR036638 GO:0046983
Amo19g3059 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983
Amo19g3059 369 CDD bHLH_AtAIG1_like 162 239 - -
Amo19g3059 369 MobiDBLite consensus disorder prediction 346 369 - -
Amo19g3059 369 PANTHER TRANSCRIPTION FACTOR BHLH30 89 368 - -
Amo19g3059 369 PANTHER TRANSCRIPTION FACTOR BHLH30 89 368 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3059 Amo-Chr19 138494258 138496546 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3059 113 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 59.489 5.80e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo19g3059 HLH 1.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3059 - - fve:101307389 307.76