Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3053 ATGGCGTCCGCCTCTTCTTCCACTTCAATCCCACTACCACCACCACCAAGATCATGCACCTATCACGTATTCTTGAGTTTCAGAGGAGAAGACACTCGCACAGGTTTTACTGGCCATCTCTATGCGGCCCTCAACAGGAAGGGAATCACAACCTACAAAGATGACCAAAACCTTCGCAAAGGCCATGTTATTTCAAAAGAACTCCTCAAAGCAATTGAAGAGTCCATGTTTGCAGTTATCGTTTTTTCACCGGACTACGCTTCCTCCAGTTGGTGCTTGGATGAGCTCCAAAAAATCATGGAGTGCAACAACAAAGTGGGACAACAGATCGTGCCGGTGTTCTACGATGTGGAGCCTTGTGATGTGAGGCACCAAATAGGAACCTTTCATGAAGCTTTCAAGAAACACGAACAGAGACATAACCGTGAGAAGATCAAAAGATGGAGAGATGCGCTAACACAAGTTGCTACTCATTCTGGTTGGACCTCCAAAAATCACGACGAAGCAGTACTTGTGGAAAATATTGCTCAACATATATTTGAAATATTGATTCCTAAGTTTCCATCTTCAATGAAGAATCTTGTGGGGATTAATTCAAGAGTGGAACAAGTGATTACTCTCATTGGCCTTGGATTGAATGATGTTCGCTTTATAGGCATATGGGGAATGGGCGGCATAGGTAAGACCACTATTGCTAGAGCTGTCTTTGAAACCATTCGATGTAGTTTTGAAGTTACTTGCTTTCTTGCTGATGTAAGGGAGAACTGTGAGAAAAAAGATATTACTCACATGCAAAAGCAACTTCTTGATCAAATGAATATAAGTTCAAATGCTGTTTATAACAAGTATGATGGGAGGACAATAATTCAAAACTCTTTACGTCTCAAAAAGGTACTTCTTGTTCTTGATGATGTAAATCATGAAAAACAATTAGAAGATTTGGCTGGAGAAAAAGCTTGGTTTGGTCCTGGAAGCAGAATAATAATCACAACTAGAGATTTCCATCTGCTAAGGAAAAATAAGTTGCATGAAACTTATAACGTTGAAGGATTAGTGGAAAATGAAGCCCTTAACCTCTTTTCTTTAGAAGCTTTTAACCTGCCAAAACCTTCAGAAGAGTTTTTGGCGTTGTCCAAAGAAGTGGTCAAATACAGCGGTGGTCTCCCATTGGCACTTAAAGTATTGGGTTCCTATCTTAATGGTAGAGGTATTGAGGTTTGGCATAGTGCTATTGAAAAAATAAAGCATTTTTCACATTCTGAAATTATTGATGTATTGAAAATAAGCTATGATGGTTTAGATGATATGGAAAAAGATATTTTTCTAGATATTGCTTGTTTCTTTAAAGGATGGCAGAAACATCATGTAACAGAGATATTAAAAAGATGTGGTCATGATGCTGAAATCGGTATTGATATTTTGATTAATAGATCATTGATCACTATAGACAAATATGATTATGATTATTGGTTGGGGATGCATGATCTGCTTGAAGAAATGGGCAAACAAATTGTAATTCAGAAATCTCCAAATGATGCTTGTAAGCGTAGCAGATTGTGGTGTTTGGAGGATGTTGAATTTGTACTTACTCAAAAGAAAAAAACTAAAGCAACTCATGGCATCGTTCTACATGAGTGGTATAGCGAGACTGAAGTGAATCAGAGAGATTTATCTTTCTCAAAATTGTGCCAGTTAAAGCTACTCATTTTAGATGGCGTGAAAGCTCCCATTCTCTGCGATATTCCTTGTACATTAAAGGTATTTTGCTGGAGACGTTGTCCAATGAAAACTCTGCCCCTTACAGATCATCAACGCTATGAGCTTGTTGAAATTAATCTGTCTAAAAGCCAAATTGCAGAGTTATGGGATGGAAAGAAGGTTTTAGAAAACTTAGAGCACTTATATCTATCATGGTGCAAGCAGCTGAAGCAAACGCCAGATCTTTCTGGGGCTCCCAATCTTAAAAAACTTAATCTTCGGGGATGCGAGGAGCTGGATTATATTCACCCGTCTCTCGCACACCACAAAAGGCTTGTTGAATTGAATTTAGAAGATTGTAAGAGACTTGAAACACTTGGAGATAAATTGGAGATGAGTTCACTCGAGAAACTAGATCTTGATAGCTGCAGTAGTTTGAGAAGACTGCCAGAATTTGGGGAATGCATGAAAAAGTTATCGATTCTTAATCTGAGAAATACAGGTATAGAAGAGCTACCCCCAACGCTTGGAAATTTGGCTGGCGTGTCTGAGTTGAACTTAAGTGGATGCGACAAGATTACTGGTCTTCTCTTATCACTTGGATGTTTCGTTGGCCTTAAAAAGTTGGTGTTACGTGCTCTTCCACAGAAAACTGATGGGTTAGAGTCCCTCACAGTCAGAGCTGATTATGATGATTCTGACAGCTCATCTAGAGAAGAGTCGACCCTTTCCTATGATATTGCCCACTTAGCCTCGTTGACGTATTTGGATTTATCTCGGAACAGGTTTTTAAGAGTTCCTATAAGTATCCATCAACTTCCCAGACTTACACATCTAAAGCTATCTTTTTGCGATGAATTGGAGGTTTTACCAGAGCTTCCATCAAGTCTAAGAGAATTAGACGCACAGGGTTGTTATTCACTGGATAAATCATATGTTGATGATGTCATATCAAAGACGTGTTGTGGCTTTGCAGAATCAGCTAGCCAAGATCGTGAAGACTTCTTGCAAATGATGATCACAGGGGAGGAAATTCCAGCATGGTTTGAGCATCAGGAAGAAGATGAGGGAGTATCAGTCTCATTCCCACTTAATTGCCCTTCAACTGAAATGGTCGCACTTGCTCTCTGTTTCCTATTTAACGGTATCGAAGGATTACAGCCTTCGGTGATCTGCAACGGGAAAGAATTCATTAACGCGAGTTTTTACTGGTGGTCTAGTTTATATAATTTGTTGTTCATTGTGTGCGTGAACGGTTACTATTTTAGTAAGCTGTTATGCCACCACAATCGCTTCCAAATGTTATTTCCATATGCTGACCATCTTGGTATCCGAGTACAGAGATGTGGAGCACGTTGGGTGTACAAGCAAGACATTCAAGATTTCAAGAAAAGAAAAGCAACTCTAGAAGACTTCAACTGA 3120 0.3939 MASASSSTSIPLPPPPRSCTYHVFLSFRGEDTRTGFTGHLYAALNRKGITTYKDDQNLRKGHVISKELLKAIEESMFAVIVFSPDYASSSWCLDELQKIMECNNKVGQQIVPVFYDVEPCDVRHQIGTFHEAFKKHEQRHNREKIKRWRDALTQVATHSGWTSKNHDEAVLVENIAQHIFEILIPKFPSSMKNLVGINSRVEQVITLIGLGLNDVRFIGIWGMGGIGKTTIARAVFETIRCSFEVTCFLADVRENCEKKDITHMQKQLLDQMNISSNAVYNKYDGRTIIQNSLRLKKVLLVLDDVNHEKQLEDLAGEKAWFGPGSRIIITTRDFHLLRKNKLHETYNVEGLVENEALNLFSLEAFNLPKPSEEFLALSKEVVKYSGGLPLALKVLGSYLNGRGIEVWHSAIEKIKHFSHSEIIDVLKISYDGLDDMEKDIFLDIACFFKGWQKHHVTEILKRCGHDAEIGIDILINRSLITIDKYDYDYWLGMHDLLEEMGKQIVIQKSPNDACKRSRLWCLEDVEFVLTQKKKTKATHGIVLHEWYSETEVNQRDLSFSKLCQLKLLILDGVKAPILCDIPCTLKVFCWRRCPMKTLPLTDHQRYELVEINLSKSQIAELWDGKKVLENLEHLYLSWCKQLKQTPDLSGAPNLKKLNLRGCEELDYIHPSLAHHKRLVELNLEDCKRLETLGDKLEMSSLEKLDLDSCSSLRRLPEFGECMKKLSILNLRNTGIEELPPTLGNLAGVSELNLSGCDKITGLLLSLGCFVGLKKLVLRALPQKTDGLESLTVRADYDDSDSSSREESTLSYDIAHLASLTYLDLSRNRFLRVPISIHQLPRLTHLKLSFCDELEVLPELPSSLRELDAQGCYSLDKSYVDDVISKTCCGFAESASQDREDFLQMMITGEEIPAWFEHQEEDEGVSVSFPLNCPSTEMVALALCFLFNGIEGLQPSVICNGKEFINASFYWWSSLYNLLFIVCVNGYYFSKLLCHHNRFQMLFPYADHLGIRVQRCGARWVYKQDIQDFKKRKATLEDFN* 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3053 1039 Gene3D - 18 183 IPR035897 -
Amo19g3053 1039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 444 IPR027417 -
Amo19g3053 1039 Gene3D Ribonuclease Inhibitor 548 695 IPR032675 -
Amo19g3053 1039 SUPERFAMILY L domain-like 556 875 - -
Amo19g3053 1039 Pfam C-JID domain 907 1025 IPR045344 -
Amo19g3053 1039 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 18 958 - -
Amo19g3053 1039 Gene3D Ribonuclease Inhibitor 801 885 IPR032675 -
Amo19g3053 1039 Gene3D Ribonuclease Inhibitor 696 793 IPR032675 -
Amo19g3053 1039 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 958 IPR044974 GO:0006952
Amo19g3053 1039 Pfam TIR domain 21 195 IPR000157 GO:0007165
Amo19g3053 1039 SUPERFAMILY "Winged helix" DNA-binding domain 420 529 IPR036390 -
Amo19g3053 1039 Pfam NB-ARC domain 213 424 IPR002182 GO:0043531
Amo19g3053 1039 PRINTS Disease resistance protein signature 696 712 - -
Amo19g3053 1039 PRINTS Disease resistance protein signature 217 232 - -
Amo19g3053 1039 PRINTS Disease resistance protein signature 292 306 - -
Amo19g3053 1039 PRINTS Disease resistance protein signature 385 399 - -
Amo19g3053 1039 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 161 IPR035897 -
Amo19g3053 1039 Gene3D - 184 346 IPR027417 -
Amo19g3053 1039 ProSiteProfiles TIR domain profile. 19 183 IPR000157 GO:0007165
Amo19g3053 1039 SMART till_3 20 158 IPR000157 GO:0007165
Amo19g3053 1039 Gene3D - 350 434 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3053 Amo-Chr19 138432463 138445393 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3053 11 845 WRKY Transcription Factor Family AT4G12020 30.094 1.24e-91 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3053 - - adu:107485881 1607.42