Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3009 ATGAGAATAGGGTCCATGGATGCTAATAATAACAACAGCAGTAAGCAACAAGGTCCTCCAAAAGGCGGTGAAATAAGCATGTGGGAGAAGCAAACAACAGKAGTGGTGGTTGCGATTCCAAGCGAGAGCCAAGATTCCAAAGGGGTTACTGAATCTTTGACACCAAAGCATAGCAGTAGAGTTGACTCCCCTCTCACAATGCACAACAACGACAACAATGATGCTGCTTCAGTCTATGGAACCACAAAGTCACCACCTTTGAACTGTGCTTCCCCTGAAATAAGGTTCATGCCAAGCCCTAACAAGCCCCCAAGAATTCCCAATTCAAATGCAAACCTTGTCAGAAGGAAATCACTTTCAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAGCCTTATCCCATTGATGGTTCTGTTTTAGATGACAGTAATGTTAYTGGCATTTCAACTTTGCAAGAACAGTTAGCTGGTAACTCACCGTATAGGACCTCATTCAAAGCATCATCGCCTAATAACAAACCTGGGACTGTTAATAGAACAGTTTCCATCACTTCCGTGACTCCCAAGACGCCTTTGATGGCGTCTCCCGGTCCTGCCGGGGAGGATGAGGARGAAATCATTTACAAGAAAGTTGAATTGAGTAAAGAGAAGCGTAAGAGAGTGACCACTATGGTTTTGATTGAATGCMTTGTGTTTGTGTGCCTTGCTGGTACCTTGATAGCTAGCTTGACAGTTGAAAAGCTCAGGGCGACGATGATTTGGGGGTTGGGGATTTGGAGATGGTGCGTTCTTGTGTTGGTGACATTTTGTGGCATGTTAGTTACAAGATGGTTTATGCACCTTGTTGTTTTCTTGATTGAGATGAACTTTCTGTTGAGGAAAAAGGTGCTCTATTTTGTCCATGGACTTAAGAAATCTGTTCAGGTCTTCATTTGGCTCGGTTTAGTTCTTCTCACATGGGTGCTACTAATCAATCGTGGCGTGACACGATCTAAATTAGCCTCGAAAATCTTGGATGGTGTGACATGGACTCTTCTTTCCCTTCTACTTGGAGCATTCTTGTGGTTGATAAAGACATTGCTGCTGAAGATTTTGGCATCGAATTTCCATGTCAAGTCTTTCTTTGATCGGATTCAAGAATCGATATTCCATCAGTACATTTTGCAGACTCTGTCTGGGCCTCCGCTTATAGAAGAAGCTGAGAAGGTTGGGGGATCATTAAGTATTGGTCAATTTAGTTTCAAYAGTACAACAGGTAAAGGTGGCACAAAGAAAGAGGTTATTGATATGGCAAAGCTTCATAAGATGAAACAAGAGAAAGTTTCAGCCTGGACTATGAAGAATTTGATAGATGCTGTGACAAATTCAGGTCTGTCCACGATCTCTAATTCACTAGACGAAAGTTTCGACGATGGAGTGACTGAGCAAACTGATAAAGAGATTACAAATGAGATGGAAGCCACTGCTGCCGCCTATCTCATCTTCAGGAATGTTGCTGCCCCRGGTTGCACGTATATTGATGAGTATGAACTGAGGAGGTTTATGATCAAGGAAGAAGTTGATTTAGTATATCCTCAATTGGCACAAGCAGAGACAGGGCAAATTACCAGAAAGTCATTAGCAGATTGGGTGTTGAAGGTATATCAAGAACGAAAAGCATTGGCACATGCCTTAAGCGATACCAAAACAGCCGTAAGACAATTGAACAAACTTGTGACAGGGATCCTAGTGATTGTGACTATAGTAATTTGGCTTCTACTGATGGAGATTGCAACGACAAAAGTACTTGTTTTCCTCTCTTCGCAGCTAGTACTTGCCGCTTTCATGTTTGGAAATACATGCAAGAACATTTTTGAAGCTATCATCTTCGTGTTTGTGATGCATCCATTTGATGTTGGTGACCGATGCGTTGTAGATGGCGTGGAGTTATTGGTTGAAGAAATGAACATACTGACAACAGTGTTCTTGAAGCTGAATAATGAAAAGGTGTACTATCCAAACTCAGTCCTTGCCATGAAACCAATTAGCAATTATTATAGAAGCCCGGATATGGGTGATGGYGTAGAATTTGCCATCGATTTTTCGACGCCAGCAGAGAAGATCGGTGCACTGAAAGAAAAGATAAAGAGGTACTTGGAGAGGAATCCACAATACTGGCATCCTAATCACGGGTTAGTAGTGAAGGAGATTGAGAATGTGAACAAGATTAAGATGGGTGTGTATGTGGTGCACACAATGAACTTTCAAGAGTTTGGGGAGAAGAACAAGCGAAGAACTGAACTYGTGATTGAATTGAAGAAGATATTAGAAGAGCTAGATATCAGATACAACCTTCTTCCACAAGCTGTTCATGTTAGCCATGTTGAATCAAATACAAGTCCACTCAAGAGATAA 2403 0.417 MRIGSMDANNNNSSKQQGPPKGGEISMWEKQTTXVVVAIPSESQDSKGVTESLTPKHSSRVDSPLTMHNNDNNDAASVYGTTKSPPLNCASPEIRFMPSPNKPPRIPNSNANLVRRKSLSRSVYSKPKSRFGEQPYPIDGSVLDDSNVXGISTLQEQLAGNSPYRTSFKASSPNNKPGTVNRTVSITSVTPKTPLMASPGPAGEDEEEIIYKKVELSKEKRKRVTTMVLIECXVFVCLAGTLIASLTVEKLRATMIWGLGIWRWCVLVLVTFCGMLVTRWFMHLVVFLIEMNFLLRKKVLYFVHGLKKSVQVFIWLGLVLLTWVLLINRGVTRSKLASKILDGVTWTLLSLLLGAFLWLIKTLLLKILASNFHVKSFFDRIQESIFHQYILQTLSGPPLIEEAEKVGGSLSIGQFSFNSTTGKGGTKKEVIDMAKLHKMKQEKVSAWTMKNLIDAVTNSGLSTISNSLDESFDDGVTEQTDKEITNEMEATAAAYLIFRNVAAPGCTYIDEYELRRFMIKEEVDLVYPQLAQAETGQITRKSLADWVLKVYQERKALAHALSDTKTAVRQLNKLVTGILVIVTIVIWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVVDGVELLVEEMNILTTVFLKLNNEKVYYPNSVLAMKPISNYYRSPDMGDGVEFAIDFSTPAEKIGALKEKIKRYLERNPQYWHPNHGLVVKEIENVNKIKMGVYVVHTMNFQEFGEKNKRRTELVIELKKILEELDIRYNLLPQAVHVSHVESNTSPLKR* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3009 800 PIRSF Memb_At2g17000 9 799 IPR016688 -
Amo19g3009 800 MobiDBLite consensus disorder prediction 1 110 - -
Amo19g3009 800 MobiDBLite consensus disorder prediction 163 182 - -
Amo19g3009 800 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 59 789 IPR016688 -
Amo19g3009 800 MobiDBLite consensus disorder prediction 1 20 - -
Amo19g3009 800 SUPERFAMILY Sm-like ribonucleoproteins 622 681 IPR010920 -
Amo19g3009 800 Pfam Mechanosensitive ion channel 573 778 IPR006685 GO:0016020|GO:0055085
Amo19g3009 800 Gene3D - 632 681 IPR023408 -
Amo19g3009 800 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 9 59 789 - -
Amo19g3009 800 MobiDBLite consensus disorder prediction 36 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3009 Amo-Chr19 137281240 137284169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3009 61 789 Mechanosensitive Ion Channel Family AT5G12080 59.482 0.0 868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3009 K22048 - gmx:100803107 1158.67