Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2997 ATGATATCTTCTGGGCTCAACTTGGTGATGACTGTGATTGGGTTTGCGGTAAGCACCATGTTCATTGTGTTCGTGTGCACGAGGCTTGTCTGTGCTCGAATCCACTTGAATGCTTCAAGGAGATCCTTTCCCATTGCTTCCAGATCCAATCTTAGCATGATGGAACGGGGTTGGCATGGTCTTGAACGCACAGCTGTAGCTAAATTTCCAACAAAGAAGTTCAGTGACAAGTTCTTTTCTGCTGAAGAAAATTCTCAGTGTACAGTCTGCCTCTCGGAGTACCAAGGTGAAGACATTCTGCGTATCCTCCCCTACTGTGGACACTCATTCCATGTGACCTGCATAGACTTATGGCTGCAGCAGAATTCCACTTGTCCAGTTTGTCGAATATCATTGCGGGAATTTACTGAGAGAAAGCGGTTAATGCAACCCTTATTCAGCTCTGCTTTACGACCTCATCGCAGCGCAGAATCCATTGAGAACCCCCATTATCTCTGTATGATGGGTGATAATGGGTTACCATTGAGAACCCCAGACAACCATGGGGCTAATGTGATGCAAGAGGACAGTTTTCCATCCGAGGGTGGTGGAGCAGATGCTACAGATAGCATCACCTGTCTTATTCCGGACGATCTTGTTAAAGATGAAGAGAAGAGGCATATAGAGAGCCCGTCAAACTTCTAG 684 0.4635 MISSGLNLVMTVIGFAVSTMFIVFVCTRLVCARIHLNASRRSFPIASRSNLSMMERGWHGLERTAVAKFPTKKFSDKFFSAEENSQCTVCLSEYQGEDILRILPYCGHSFHVTCIDLWLQQNSTCPVCRISLREFTERKRLMQPLFSSALRPHRSAESIENPHYLCMMGDNGLPLRTPDNHGANVMQEDSFPSEGGGADATDSITCLIPDDLVKDEEKRHIESPSNF* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2997 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 134 IPR013083 -
Amo19g2997 227 PANTHER OS11G0150450 PROTEIN 1 226 - -
Amo19g2997 227 CDD mRING-H2-C3H2C2D_ZSWM2 86 129 - -
Amo19g2997 227 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Amo19g2997 227 Pfam Ring finger domain 86 129 IPR001841 -
Amo19g2997 227 SMART ring_2 87 128 IPR001841 -
Amo19g2997 227 SUPERFAMILY RING/U-box 80 135 - -
Amo19g2997 227 PANTHER OS11G0150450 PROTEIN 1 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2997 Amo-Chr19 137069112 137072010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2997 45 132 C3H Transcription Factor Family AT4G10150 42.045 6.29e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2997 - - gmx:100786109 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2997 19 137069112 137072010 Amo09g2741 09 106064401 106066847 hybridization