Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2993 ATGGCTGACCCTTACGGCCTCCCAGAGGATCTCCGGCGACTCATGTCCAACAGACCCCACTTCACCACTGCCACCGCCGCCGCTCCTTTCTTTCCTCTTCCGGAGAACCCACTCTCTCTCCACCACCACCACCACCTCCTCAATGCTCCTCCTCCACCACCGCCTCTCAACACCACCTACGACCCMATCATCATCAACAACGTCGTCGGCGACCTTTTCTTTCCTCGTTCTAATAACAACAACACCAGCGCCGCCTTCACCGCTCATCATCATCACTTCCCTCTCCATCACCACCACCACAACTCCACCAACAATTCCCCGTCTTCTTCTTCTCTCAACCCCACACCCCCGCCACCTCCTCCTCCTCCTACTACTTCTGTCTCAGATCATCATCATCATCATGCATTCATGGCCGCCATGGACACTGCTTCTGCTGCTGCTGCTGCTGCATCCATGGAAAAAGGATGGCTGGCCTTCGACACCGGCACCAACCGCTGGCCTCGGCAGGAGACTCTCTCCCTTCTTGAGATCAGATCTCGTCTTGATTCCAAGTTCAGAGAAAATAATCAAAAAGCTCCCTTGTGGAATGAGATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGGAGTGGGAAGAAATGCAAAGAGAAGTTTGAGAATTTGTACAAGTATTACAAGAAGACCAAGGAGGGAAAAGCTAGTAGACAAGATGGGAAACACTACAGATTCTTCAGGCAACTTGAAGCTATATGTGGTGGCGGCGGCGGCAGCGGCGGAAGTGGTGGAGATTCATCAAACACTACTCATAATAATAATCTTCATGCCTTAGCTTCAAACACTGCTTCAGCTTCTGTTGCTGGTGCTAATGTTCAAACCCCAATAAGCTTCAATAATGGTGATCATCATAACAATAATAGCTTGATCAAGTGTTCAGAGAGCTTGAGTTTTTCGAACTCGTGTGAACTGGAGACATCGTCATCTGAGAACAATGATGAGGATCTTTCAGCCATTGCATACATGATGAAGCACTCCACATCTTCAAGGGACAACAATAATAACAAGCAGAAAGGGGTGCAATTGGATGATGATCATCATGGGGGAAGGGTGAGAAGAAGAAGAAGCTTGAGGGCAAAAGTGGAAGAGATAGTTGGTTCCCACATGAGGAAGATCATCGAGACACAAGATGCATGGATGGAGAGAATGGTGAGTGTTGTTGAGCAAAGGGARAAGGAGATGGCATCCATGGAGGAAGAGAGGAAGAAGAAAGAGTCAATGAGGTTTGACCAAGAAGTAACCGAGCTTTGGGCAAAAGAGAGAGCTTGGGTTGAAGCAAGGGATGCTGCATTGATAGAAGTTGTAAGAAAACACATTGGAAATGGAAACAATAATAGCAATAATAATAAAGAGTTTGAGATTATTGAAGCATTGGCACCTCAAAGCAATAACAAGAACAACAAGGGCCAAACTGCAAATAATAACAACAATAATGGTGGTGGTGGTGGGAGGTGGAGTGAAATGGAGATATCAAACTTGATACAGTTGAGGACAGGGTTTGAAGAGAGAATGAGGGAGAATAATAATAATAATAATGGTGGAGGAGGGTATTATTTTGAGAGTAATAATAATAATAATAATAATAATGGGGTAAGTAGTGTTTGGGAAGAGATCTCAGGAAAATTGGGATGTTTGGGATTTGAGAGAAGTTCAGAAGAGTGTAAGCAGATTTGGGATGAGATCAGCATCTCACTTGGGAGGACAAATACTTCTGCTGCTGCTGCTGCTGTTGCCAAAACCAATAGGCCTTGGTGTTTGGAACTCAAGCTCACTGATGATGATGATGATGATGATGATGATGAACATCATCATGATCATGATGATCATCACATTTGA 1893 0.4517 MADPYGLPEDLRRLMSNRPHFTTATAAAPFFPLPENPLSLHHHHHLLNAPPPPPPLNTTYDPIIINNVVGDLFFPRSNNNNTSAAFTAHHHHFPLHHHHHNSTNNSPSSSSLNPTPPPPPPPPTTSVSDHHHHHAFMAAMDTASAAAAAASMEKGWLAFDTGTNRWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGGGGGSGGSGGDSSNTTHNNNLHALASNTASASVAGANVQTPISFNNGDHHNNNSLIKCSESLSFSNSCELETSSSENNDEDLSAIAYMMKHSTSSRDNNNNKQKGVQLDDDHHGGRVRRRRSLRAKVEEIVGSHMRKIIETQDAWMERMVSVVEQREKEMASMEEERKKKESMRFDQEVTELWAKERAWVEARDAALIEVVRKHIGNGNNNSNNNKEFEIIEALAPQSNNKNNKGQTANNNNNNGGGGGRWSEMEISNLIQLRTGFEERMRENNNNNNGGGGYYFESNNNNNNNNGVSSVWEEISGKLGCLGFERSSEECKQIWDEISISLGRTNTSAAAAAVAKTNRPWCLELKLTDDDDDDDDDEHHHDHDDHHI* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2993 630 MobiDBLite consensus disorder prediction 95 130 - -
Amo19g2993 630 Pfam Myb/SANT-like DNA-binding domain 164 251 IPR044822 -
Amo19g2993 630 ProSiteProfiles Myb-like domain profile. 164 223 IPR001005 -
Amo19g2993 630 MobiDBLite consensus disorder prediction 481 501 - -
Amo19g2993 630 MobiDBLite consensus disorder prediction 356 374 - -
Amo19g2993 630 MobiDBLite consensus disorder prediction 346 374 - -
Amo19g2993 630 Gene3D - 166 228 - -
Amo19g2993 630 Gene3D - 504 583 - -
Amo19g2993 630 CDD GT1 164 230 - -
Amo19g2993 630 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL-LIKE 72 589 - -
Amo19g2993 630 MobiDBLite consensus disorder prediction 481 505 - -
Amo19g2993 630 MobiDBLite consensus disorder prediction 111 126 - -
Amo19g2993 630 SMART sant 500 583 IPR001005 -
Amo19g2993 630 SMART sant 162 225 IPR001005 -
Amo19g2993 630 PANTHER - 72 589 - -
Amo19g2993 630 Coils Coil 399 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2993 Amo-Chr19 136949138 136952051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2993 165 581 Trihelix Transcription Factor Family AT5G03680 40.411 3.25e-81 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Amo19g2993 Myb_DNA-bind_4 5.9e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2993 - - ahf:112711553 822.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2993 19 136949138 136952051 Amo09g2734 09 105867366 105870235 hybridization