Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2984 ATGGACGTGCCTAAACACCGTTCCGGTCGATCAACGTCCCTCAGGGATGCCACCGACTCCTCCAAGATGGAAGGCACCGGCAGCTGGGACGCCCTCGAATGGACTAAGATTGAGCCGGTTTCGCGATTCGTCTCGCATACGAATCTTGATTTCTTGCTTGAGGCGGAGCATGTTATTGCCGAAGGACATGGTGTTGTTCTTGTTAATACAGATGATGCAGGCATGTTGATGATAACAAATTTTCGTCTTCTTTTTCTGAGTGAGGGAACTCGAAAAGTTATTGCCCTTGGAACAATACCACATGCAACCATTGAGAAGTTTAACAAGACAGTTGCAAYGACTCAATCAAATGCTCGCCAACTCGAGAAGACACCACCTCAAAGATTGCTCCAGGTGATTGGCAAAGATATGAGAATTATAGTCTTTGGTTTCAGACCTCGTACAAAACAGAGACGTATAATATTTGATGCACTACGAAGGTGTACAAAACCAGCAACGTTATGGGATCTTTATGCTTTTGTTTGTGGACCTTCTAGGTTTAYGAACACAAATCCACAAGTGCGCTTATTGGATGAGTATTTTCGACTTATTGGCAAAGGTGCTCGTGCATCAACTGATATGATTGAAAGTGGGTCCTTCACCTTGTCAAATGACTTATGGAGAATAAGTAGCATAAACTCCAACTATAAAATGTGTCCGAGTTATCCATTTGCTTTGGTTGTTCCCAAGATCATTAGTGATGATGAAGTTCTCTTGGCTTCCAACTTTCGTGCAAGGGGTCGGCTGCCTGTAGTTTCATGGTGTCATCTTGGTACTGGTGCAGTTCTTGCACGTTCATCCCAACCCTTAGTTGGTCTGATGATGAATATGAGGAGCAACATGGATGAAAAACTCGTGGCTGCACTTTGCAGCAAACTTGATGATGGCTCACGGAGAAAGCTATATATTGCTGATGCAAGGCCTAGGAAAAATGCATTAGCTAATGGAGCCATGGGTGGTGGCTCAGAATCATCATCAAACTATTTTCAGTCAGAGATAGTCTTTTTTGGGATAGACAACATCCATGCAATGAGAGACAGCTTTGCTCGGCTCAGAGAATATTTGGACACTCATGGAAGAGCCTCATCAGATGGAATGTCATCATTTTTGAGACATGGTGGGTCAACGTGGGGTGGAGGAAACTTAAGTAGCATGTCTGCTTCAGTGTCAACCCTTGGGGACAGTGGATGGTTACTGCATGTTCAAAATGTTTTGGCTGGTTCAGCTTGGATTGCTGCTCGTATTGCTATGGAAAAGGCTTCTGTTCTTGTGCATTGCAGCGATGGTTGGGATAGAACAAGTCAGTTGGTTGCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCAATGGGTTTCAGGCACTTGTTGAAAAAGATTGGRTAGCATTTGGTCATCCATTTTGTGATCGTGTGGGATTGCCAGCTTTCTCTGGAAGTGAGTTAACTAGGCAGCCTTCATCTAGCAATTTTGCAGCATCACCTGGACGGCAGCCATCAGGAGCATTTACATCTCCGTCGTCTTCTCATGCACAAACTTCTAACAACTACTCTCCCATCTTTTTGCAGTGGGTTGATTGTGTTTCTCAATTGTTGCGGATGTATCCCTTTGCTTTTGAGTTTTCTGCGGCTTTTCTAGTGGACTTCTTAGACAGCATGCTTTCATGTCGTTTTGGAAATTTCTTATGTAATAGTGAGAAGGAGAGGCTACAATGCAATATTTCTGAAACTTGTGGATGTATGTGGGTATACTTGGCTGATTTGCGTGCTTTAGAAGGAGGTTCCCATGTACATTATAATCCTTTCTATGACCCACTGAAGCACAATGGTCCTCTTCTGCCCCCAGCAGCAGCATTAGCCCCAACATTATGGCCCCAATTCCACCTTCGTTGGGCCTGCCCTGAAGAAGCACAAGCTGGGGAGATTGAAGCAAAATGTAGGAAGATAATCACGAAATACACCGAGTTGCAGAAGGCCAAAGAAGTGGCAGAACGTAAATCAAAAGAAATTTCAAATGCCATGGAATCACTGAACGCAGAATTACAAAATTTGAAYCAGCAAAACAYCTCAGCTATGAATATGGCCAACAGGGCAAACAAAGAAAACATGTCTATAAAGCGTGCAATTCAGTCAATTGGGTGCAAGGTTCACTTCTCCAATACTGGAGATTGCATTGTGGACATTGAAAGTAATCCATTGGGAACAGCACAAAACTTCTTATATTGCTCCAAGAAAGGATCAGATGGTATCACGCTTGATGARGAAAAGGATCTGGCTGTTGCAGTAACAGTTACAGCCGATGATGACGACAATGATGAGAACAGCCCTATCGGTCGTGTATGTGAGAATCTATGCCCGTTTCGCTCTGCAGATGGAGGCTGCAGATGGCCCAATGGTCGTTGTGCTCAACTAAGCAGCCAGTTCGTTGGTCTTAGGGCAAATTTTGATGCATTTGACAAACTCTCCATTGATGATAGTTATTTCAAGCCTGAGTGA 2538 0.4366 MDVPKHRSGRSTSLRDATDSSKMEGTGSWDALEWTKIEPVSRFVSHTNLDFLLEAEHVIAEGHGVVLVNTDDAGMLMITNFRLLFLSEGTRKVIALGTIPHATIEKFNKTVAXTQSNARQLEKTPPQRLLQVIGKDMRIIVFGFRPRTKQRRIIFDALRRCTKPATLWDLYAFVCGPSRFXNTNPQVRLLDEYFRLIGKGARASTDMIESGSFTLSNDLWRISSINSNYKMCPSYPFALVVPKIISDDEVLLASNFRARGRLPVVSWCHLGTGAVLARSSQPLVGLMMNMRSNMDEKLVAALCSKLDDGSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRDSFARLREYLDTHGRASSDGMSSFLRHGGSTWGGGNLSSMSASVSTLGDSGWLLHVQNVLAGSAWIAARIAMEKASVLVHCSDGWDRTSQLVALANLLLDPYYRTFNGFQALVEKDWXAFGHPFCDRVGLPAFSGSELTRQPSSSNFAASPGRQPSGAFTSPSSSHAQTSNNYSPIFLQWVDCVSQLLRMYPFAFEFSAAFLVDFLDSMLSCRFGNFLCNSEKERLQCNISETCGCMWVYLADLRALEGGSHVHYNPFYDPLKHNGPLLPPAAALAPTLWPQFHLRWACPEEAQAGEIEAKCRKIITKYTELQKAKEVAERKSKEISNAMESLNAELQNLNQQNXSAMNMANRANKENMSIKRAIQSIGCKVHFSNTGDCIVDIESNPLGTAQNFLYCSKKGSDGITLDEEKDLAVAVTVTADDDDNDENSPIGRVCENLCPFRSADGGCRWPNGRCAQLSSQFVGLRANFDAFDKLSIDDSYFKPE* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2984 845 PANTHER PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1 19 844 - -
Amo19g2984 845 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 214 646 IPR029021 -
Amo19g2984 845 Coils Coil 114 124 - -
Amo19g2984 845 SUPERFAMILY PH domain-like 52 175 - -
Amo19g2984 845 CDD PTP-MTM-like 260 544 - -
Amo19g2984 845 PANTHER MYOTUBULARIN-RELATED 19 844 IPR030564 -
Amo19g2984 845 ProSitePatterns Tyrosine specific protein phosphatases active site. 437 447 IPR016130 GO:0016311|GO:0016791
Amo19g2984 845 Gene3D - 64 162 IPR011993 -
Amo19g2984 845 Coils Coil 704 715 - -
Amo19g2984 845 Coils Coil 104 112 - -
Amo19g2984 845 Coils Coil 667 702 - -
Amo19g2984 845 MobiDBLite consensus disorder prediction 499 524 - -
Amo19g2984 845 ProSiteProfiles Myotubularin phosphatase domain. 200 642 IPR010569 -
Amo19g2984 845 Pfam Myotubularin-like phosphatase domain 187 583 IPR010569 -
Amo19g2984 845 MobiDBLite consensus disorder prediction 1 22 - -
Amo19g2984 845 SMART gram2001c 41 111 IPR004182 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2984 Amo-Chr19 136616726 136630689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2984 1 845 Protein tyrosine phosphatase (PTP) family AT3G10550 66.471 0.0 1144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2984 K18081 - gmx:100781842 1339.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2984 19 136616726 136630689 Amo19g2984 19 136616726 136630689 ECH
Amo19g2984 19 136616726 136630689 Amo09g2723 09 105429601 105443694 hybridization