Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2962 ATGTTGGAAATGGAGAAGGATTTCGATTCAAAGTTGAAGATTCAGGGGAATTCTTCCTCTTCCAATGGTGGTGGTAGTGGTGGGAATAATGTACCGAGATCCAAAAGCTTTGCTTTTAGGGCTCCTCAGGAGAATTACACCATTCAGGACTTTGAACTGGGCAAGATCTATGGAGTTGGCTCTTATTCTAAGGTTGTGAGGGCAAAGAAGAAGGACACAGGAACCGTGTATGCGATGAAGATCATGGACAAAAAATTCATTACTAAAGAGAACAAAACAGCCTACGTGAAGTTGGAACGCATAGTTCTCGATCAATTGGATCATCCTGGAATTGTGCGCCTATATTTCACATTTCAAGACACTTTTTCTCTATACATGGCACTTGAATCCTGTGAAGGTGGAGAACTTTTTGATCAAATAATCAGGAAAGGACGTCTACCTGAGGATGAGGCACGGTTCTATGCAGCTGAAGTTGTCGATGCTCTCGAATACATACATAATTTAGGATTGATACATCGGGATATAAAGCCAGAGAATTTATTGCTTACAGCTGATGGACATATCAAAATAGCCGATTTTGGGAGTGTGAAGCCTATGCAGGATAGCAAAATCACTGTCCTTCCAAATGCAGCATCTGATGACAAAGCCTGCACATTTGTGGGAACCGCTGCTTATGTCCCTCCGGAGGTTCTTAATTCCTCTCCAGCAACTTTTGGGAATGACCTCTGGGCACTTGGGTGCACATTATACCAGATGCTTTCAGGAACTTCGCCTTTTAAAGATGCAAGTGAATGGCTTATATTCCAAAGAATTATAGCTAGAGAAATTCGATTTCCTGATTATTTTTCTGATGAAGCAAGAGACCTTATTGACCGGCTACTGGATTTGGACCCCAGAAGAAGGCCAGGTGCAGGACCTGATGGTTATGCTGCTTTGAAAAGGCACGCATTTTTTAAGGGTGTTGATTGGAGTAACATAAGGGCACAAACTCCACCAAAACTAGCACTGGAAGCTGGTACTCAGTCACCTATTGTTGATGAAGCTCAGGATGCAGCATGGAGTCCGTCTCATGTGGGTGATGGTTATGCAGCCTCGGCTAGACAGCCTGATGGTGCTCCATCATCGTCTGAGGGGAGCGTAACCAGACTAGCTTCAATCGATTCCTTTGATTCAAAATGGCAACAATTTTTGGAACCTGGGGAATCTGTRCTTATGATCTCTATGGTGAAGAAAATACAGAAACTAACGAGCAAGAAGGTGCAGCTTATCCTAACTAACAAACCAAAGTTGATCTATGTGGACCCGTCGAAGCTAATTGTCAAGGGAAATATAATATGGTCTGATAATCCAAATGATTTAAGCATCCAAGTGATTAGTCCATCAAATTTCAAGATATGCACACCGAAAAAGGTGATGTCATTCGAGGATGCAAAGCAAAGAGCACATCAGTGGAAAAAGGCGATCGAAGGGCTTCAAAACCGGTGA 1485 0.4276 MLEMEKDFDSKLKIQGNSSSSNGGGSGGNNVPRSKSFAFRAPQENYTIQDFELGKIYGVGSYSKVVRAKKKDTGTVYAMKIMDKKFITKENKTAYVKLERIVLDQLDHPGIVRLYFTFQDTFSLYMALESCEGGELFDQIIRKGRLPEDEARFYAAEVVDALEYIHNLGLIHRDIKPENLLLTADGHIKIADFGSVKPMQDSKITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIAREIRFPDYFSDEARDLIDRLLDLDPRRRPGAGPDGYAALKRHAFFKGVDWSNIRAQTPPKLALEAGTQSPIVDEAQDAAWSPSHVGDGYAASARQPDGAPSSSEGSVTRLASIDSFDSKWQQFLEPGESVLMISMVKKIQKLTSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLSIQVISPSNFKICTPKKVMSFEDAKQRAHQWKKAIEGLQNR* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2962 494 Gene3D - 367 494 IPR011993 -
Amo19g2962 494 CDD STKc_PDK1 49 318 IPR039046 GO:0004674
Amo19g2962 494 SMART serkin_6 51 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g2962 494 MobiDBLite consensus disorder prediction 13 33 - -
Amo19g2962 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Amo19g2962 494 Gene3D Phosphorylase Kinase; domain 1 49 134 - -
Amo19g2962 494 Pfam Protein kinase domain 53 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g2962 494 Coils Coil 474 494 - -
Amo19g2962 494 MobiDBLite consensus disorder prediction 359 379 - -
Amo19g2962 494 SUPERFAMILY PH domain-like 312 493 - -
Amo19g2962 494 ProSiteProfiles Protein kinase domain profile. 51 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g2962 494 Pfam PH domain 391 493 IPR033931 -
Amo19g2962 494 SUPERFAMILY Protein kinase-like (PK-like) 48 357 IPR011009 -
Amo19g2962 494 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 490 - -
Amo19g2962 494 Gene3D Transferase(Phosphotransferase) domain 1 135 330 - -
Amo19g2962 494 PANTHER 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 28 490 - -
Amo19g2962 494 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2962 Amo-Chr19 135585180 135591312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2962 1 494 AGC Kinase Gene Family AT3G10540 81.452 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PDK1 Amo19g2962 Pkinase 3.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2962 K06276 - gmx:100801891 873.233