Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2957 ATGGACGAAGCACAAGACAACCATGCTATTATTACCAAGAAAAAACCTTCCGCTAATCAGGACATCTCTGATGAGTTAGATCTGAAAATAAAGAAGTATCTCAGAGGAGAAGCTGCTTCTTTTGAGGATTTGAAAGATAGGAAGCTCAAGCGTCAACTATCTGTTAGAGAAGAATTATATGGCAATGCCGCGAAAGCTGCTGCCAAGGCGGAAAAGTGGCTTATGCCTAACGAGGGAGGTTATCTGGAGGCTGAAGGCATAGAGAAGACATGGAGGATCAAACAGGAGGCTATAGCGAAAGAAGTAGGTCTTGTAAACTTAAGGAACCAATACGATATTGTTTTACCAGATCTTGGTCCATATACCCTGGATTTTACTTCAAGCGGCCGTTATATGGCTGTTGGTGGTCGTAAAGGCCACCTTGGAATTGTGGACATGATAAATCTTAACCTAATCAAAGAGATTCAGGTAGCAGAAACAGTGCGTGATGTAGTATTCTTGCATAATGAGCTCTTTTTCGCTGCTGCCCAGAAGAAGTTTGTTTACATGTATAATCGAGACGGAACTGAAATTCGCTGCCTCAGGGAACATGGTGCAGCATTAAAGCTTCAGTTTCTGAAAAACCATTTTCTGTTGGCTTCAGTCAACAAATTTGGGCAACTTCATTATCAAGATATTACAATGGGTGAGATTGTGGGTAATTTTCGAACAGGCCTGGGACGCACAAATGTGATGCAAGTGAACCCCTTCAATGCRGTTGTTGGTCTGGGTCAYGCAGGTGGTACAGTTACAATGTGGAAGCCAACTAGTTCTGCTCCCCTTGTGAAAATGCTATGTCATCATGGGCCTGTTTCAGCACTAGCATTCCACCCWAATGGCCACTTAATGGCCACAGCCGGTAAAGATAAGAGGATTAAGCTTTGGGACTTGAGGAAATTTGAGCCTCTTCAAACGTTAACGGGCCACGCAAACACACTGGATTTTAGTCAAAAGGGCTTGCTTGCTTGTGGTGTTGGTTCGTTTGTACAGGTTCTGAATGATGTTTCTGGGACGCAGAACTATTCTAAGTACATGACTCATTCGATGGCGAAAGGTTACCAGATAGGAAGATTAGCTTTTCGGCCGTATGAAGATGTTCTAGCCATTGGCCATTCCATGGGTTGGTCTAGTATTCTTATTCCAGGTGCCGGAGAACCCAACTTCGACACATGGGTTGCCAATCCATTTGAAACATCTAAACAGCGGAGAGAGAAGGAAGTGCGGTCTCTTCTTGATAAACTTCCACCTGAGACTATCATGCTGGATCCAAGCAAGATTGGTACGGTGAAATCWACRTATAGAGAGAAACCGACAAAGCAAGAGAGGGAGGCTGAAGTTGAAGCCGCAGTTGAAGCTGCCAAGGGCACAAAACTGAAGAACAAAACAAAAGGAAGAAATAAGCCAGGTAAAAAGATACAGAAGAAGCAGGATGCAATTGCTAGAGTGAAGAGGCCTTACTTAGAGGAGAAGATTAACGAGGAACAAAAGATATCCCATAAGAAGCAGAAAACTAGTGAGAACATTGATTTACCAAAATCTTTACAGAGGTTTGCTCGTAAGAAATCATCATGA 1611 0.4302 MDEAQDNHAIITKKKPSANQDISDELDLKIKKYLRGEAASFEDLKDRKLKRQLSVREELYGNAAKAAAKAEKWLMPNEGGYLEAEGIEKTWRIKQEAIAKEVGLVNLRNQYDIVLPDLGPYTLDFTSSGRYMAVGGRKGHLGIVDMINLNLIKEIQVAETVRDVVFLHNELFFAAAQKKFVYMYNRDGTEIRCLREHGAALKLQFLKNHFLLASVNKFGQLHYQDITMGEIVGNFRTGLGRTNVMQVNPFNAVVGLGHAGGTVTMWKPTSSAPLVKMLCHHGPVSALAFHPNGHLMATAGKDKRIKLWDLRKFEPLQTLTGHANTLDFSQKGLLACGVGSFVQVLNDVSGTQNYSKYMTHSMAKGYQIGRLAFRPYEDVLAIGHSMGWSSILIPGAGEPNFDTWVANPFETSKQRREKEVRSLLDKLPPETIMLDPSKIGTVKSTYREKPTKQEREAEVEAAVEAAKGTKLKNKTKGRNKPGKKIQKKQDAIARVKRPYLEEKINEEQKISHKKQKTSENIDLPKSLQRFARKKSS* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2957 536 MobiDBLite consensus disorder prediction 469 536 - -
Amo19g2957 536 ProSitePatterns Trp-Asp (WD) repeats signature. 296 310 IPR019775 -
Amo19g2957 536 PANTHER BNAANNG36350D PROTEIN 11 533 - -
Amo19g2957 536 ProSiteProfiles Trp-Asp (WD) repeats profile. 277 318 IPR001680 GO:0005515
Amo19g2957 536 Gene3D - 201 393 IPR015943 GO:0005515
Amo19g2957 536 Gene3D - 89 200 IPR015943 GO:0005515
Amo19g2957 536 Pfam WD domain, G-beta repeat 278 309 IPR001680 GO:0005515
Amo19g2957 536 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 277 311 - -
Amo19g2957 536 SUPERFAMILY WD40 repeat-like 117 385 IPR036322 GO:0005515
Amo19g2957 536 Pfam BING4CT (NUC141) domain 357 435 IPR012952 -
Amo19g2957 536 PANTHER WD-REPEAT PROTEIN BING4 11 533 IPR040315 -
Amo19g2957 536 SMART WD40_4 148 185 IPR001680 GO:0005515
Amo19g2957 536 SMART WD40_4 106 145 IPR001680 GO:0005515
Amo19g2957 536 SMART WD40_4 312 346 IPR001680 GO:0005515
Amo19g2957 536 SMART WD40_4 228 267 IPR001680 GO:0005515
Amo19g2957 536 SMART WD40_4 270 309 IPR001680 GO:0005515
Amo19g2957 536 MobiDBLite consensus disorder prediction 484 520 - -
Amo19g2957 536 SMART BING4CT_2 356 436 IPR012952 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2957 Amo-Chr19 135530582 135535744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2957 119 332 U-box Gene Family AT2G33340 24.779 1.02e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2957 K14768 - gmx:100802940 876.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2957 19 135530582 135535744 Amo19g2957 19 135530582 135535744 ECH