Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2953 ATGAACTGCCTTCAGAATCTTCAGCTATCCTATGTTTTGCCCTTCCAAGTATCCACGCGCCACCACAGGAACCATCCTTTCTGTTCTGTTTCACTGGGAATCAGCAAGAGTTCTCATCAGAATCGAAGTATGGCAATTAAGTCTGCTTCTGGTTCCATACCAAGTGCAGAGACAAGTAGTTTTGATATGAAAGAGGAAAAGTCTGAGACATATAGTAACAACATGACAGAAGCCATGGGTGCTGTTTTGACATATAGGCATGAATTGGGAATGAACTACAACTTCATCCGTCCAGACTTGATAGTAGGATCATGCCTACAGACTCCCGAAGATGTTGACAAACTTCGGAAAATTGGAGTGAAAACTATATTTTGCTTGCAACAAGATCCAGACCTAGAATATTTTGGAGTTGATATCAATGCCATACGAGAATATGCCAAGGCGTGCGGTGACATTCAGCACTTGCGTGCTCAGATAAGAGACTTTGATGCATTTGATTTACGGATGCGTCTCCCAGCTGTAGTTAGCAAATTATACAAGGCAATAAATTCCAATGGAGGGGTGACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCCATTGCGTTGGCATATATGTTTTGGGTTCAGGGTTATAAACTCAATGAGGCTTATAAACTTCTCCTGAGCAAAAGGCCATGCTTTCCGAAACTGGATGCCATTAAAAGTGCGACTGCTGACATTCTTACAGGCCTCAGTAAGAAGTCTGTCACTTTATCATGGGAAGGCAGTAATTGCTCTTCAGTGGAAGTTTCAGGACTCGATATCGGATGGGGGCAGAGAATGCCCTTAGATTTTGATGACAAGCAAGGTTTGTGGTCTCTCAAGAGGGAATTGCCTGAAGGGCACTATGAATACAAGTACATAGTTGATGGGAAATGGATATGCAACAAGAATGAGCTTATAACTTCTCCCAACAAAGATGGCCATGTCAACAATTTTCTTGACGTCCTTGATGATTCCAGCAGTGTTGGCGCATTGCTTAGGGAGAGATTGACTGGTGATAATCCTGATCTCACAAAGGACGAAAGGCTGAGAATAAGAGAGTTTCTTGAAGCCTATCCTGATGAGACTGAGCAGTGA 1128 0.4291 MNCLQNLQLSYVLPFQVSTRHHRNHPFCSVSLGISKSSHQNRSMAIKSASGSIPSAETSSFDMKEEKSETYSNNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRKIGVKTIFCLQQDPDLEYFGVDINAIREYAKACGDIQHLRAQIRDFDAFDLRMRLPAVVSKLYKAINSNGGVTYIHCTAGLGRAPAIALAYMFWVQGYKLNEAYKLLLSKRPCFPKLDAIKSATADILTGLSKKSVTLSWEGSNCSSVEVSGLDIGWGQRMPLDFDDKQGLWSLKRELPEGHYEYKYIVDGKWICNKNELITSPNKDGHVNNFLDVLDDSSSVGALLRERLTGDNPDLTKDERLRIREFLEAYPDETEQ* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2953 375 Pfam Glycogen recognition site of AMP-activated protein kinase 252 334 IPR032640 -
Amo19g2953 375 Gene3D Immunoglobulins 247 337 IPR013783 -
Amo19g2953 375 ProSiteProfiles Dual specificity protein phosphatase domain profile. 92 249 IPR020422 GO:0006470|GO:0008138
Amo19g2953 375 MobiDBLite consensus disorder prediction 45 59 - -
Amo19g2953 375 CDD E_set_AMPKbeta_like_N 251 332 - -
Amo19g2953 375 SMART dsp_5 92 242 IPR020422 GO:0006470|GO:0008138
Amo19g2953 375 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 1 372 - -
Amo19g2953 375 Pfam Dual specificity phosphatase, catalytic domain 135 230 IPR000340 GO:0008138|GO:0016311
Amo19g2953 375 MobiDBLite consensus disorder prediction 45 65 - -
Amo19g2953 375 SUPERFAMILY E set domains 251 333 IPR014756 -
Amo19g2953 375 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 1 372 IPR030079 GO:0005982|GO:0007623|GO:0019203
Amo19g2953 375 CDD DSP_laforin-like 91 238 IPR045204 GO:0019203|GO:0046838
Amo19g2953 375 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 169 228 IPR000387 GO:0016311|GO:0016791
Amo19g2953 375 Gene3D Protein tyrosine phosphatase superfamily 85 365 IPR029021 -
Amo19g2953 375 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 89 234 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2953 Amo-Chr19 135489517 135495109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2953 91 368 Protein tyrosine phosphatase (PTP) family AT3G52180 70.144 4.10e-151 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2953 - - gmx:100804010 624.009