Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2899 GTTTTCCAATTATTTCTGTTGGATTCGGCAAAGAGCATCAAAGCAGTTAAAACATCTTTCAAACTTGAGGAAACAATGTCAGGAATGGAAATTTGGCCAGCCGAAGACGAGTCTAGTGAGTCTCTACCACCATTCAATAACAGGAGTGGCTACGATTCGAGAACTGGCATCTACCACTCTCTTGTTAGACTTGGCACCAAGCATGAGATCCCAACAAAGCCTGATCTCAATGTTGCCCATCTCGTGCTATCGCAGTTCCCACAAGGAGACCTTGCAGAGGCAAGAATAGCATTCGTTGATGCAGCAACTGATAAGAGTTTGAGTTATGGCGAGCTACGCAGATCAGTATACTCCCTTGCATCAGCCTTGTTCCATGGACTTGGGGTTAGGAAAGGGGATGTGCTGTTTCTCCTATCCCCTAACTCAATCCTGTTCCCAACCATATGTCTAGCCGTGTTATCAATTGGTGCAGTTCTTACCACTGCCAACCCTCTTAATACCGAGTCAGAAATTGCCAAGCAGGTACGCGACTCAGGTTCTAAACTAGCCATCTCAGCACCGGAGGAGCTACACAAATTGGTCTCAACTGGGGTGCCTACAATGCTCACATATTGTCCATCTAACAGCGGAATGCTATCAGTTGAAGAGTTGATAGAAGGCTGCTCTTGTTCTCTGGAGTTGCCGCAGGTTACTGTGGTTCAATCAGACCCTGCTGCTATACTTTACTCCTCAGGGACTACTGGGGTAAGTAAAGGTGTAGTTTTGACACACCAGAATCTCATTTCCACACTGAAACTTCTCTTCTGGTCTGTTGATGTAAGTGCATCTTCAGATGATGTCTTCTTGGCCTTCATTCCGATGTTTCATGTATACGGCCTGGTTTTCTTTGGATTAGGAATGCTGTGTGTTGGTGTTAAAATAATTGTGATGCAGAAATTTGACTTCCAAGCTATGCTTCTTGCTATTCAGAAGCACAAAGTTAATAACTTACCGGCAGTGCCGCCAGTGATCCTTGCTCTAGTGAAATATGCAAGCAAAGCTGGTTGTGACTTGTCCAGCCTCCGAAGGACGGGTACAGGTGCTGCGCCTTTGAGTAAGGAAGTGTCACGGGAGTTCAGAAAAATGTTTCCATGGGTTGAACTAAGGCAAGGTTATGGCCTAACAGAAAGCTCAGCTGCAGCTACCTTTCTTGTGTCAGACAGGGATGCTAAAGCTCGGCCAGACTCATGCGGCCAGTTGCTTCCAACCTTTTGTGCAAAGGTCGTAGACATTGATACCGGAAAGCCTTTGCCTCCTCAAAAGAAAGGAGAGCTGTGGCTGAAAAGTACTACTATTATGAAAGAGTATCTGGGAAATTCGGAGGCAACAACCCTAACAGTTGATTCAGATGGCTGGCTGAAGACAGGTGATCTCAGTTACATTGATGAAAGTGGATTTGTTTATATAGTTGAACGGATAAAGGAGCTGATCAAGCACAATGGATATCAGGTGGCTCCTGCAGAACTGGAGTCTTTATTGCTAAGCCATCCCCTTATTGTTGATGCAGCTGTTATACCAGTTGAAGATGAAGCAACTGGACAGATACCAATGGCCTATGTTGTGAGAGCAGCTGGTTCTGAACTCTCAGAAGACCAAGTCATTCAATATGTTGCAGGCCAGGTGGCTCCATATAAGAAAGTGAGAAGGGTGAGTTTCATTGAAACTATTCCAAGGTCAGCAGCTGGCAAGATATTGCGCAAGGACCTCGTTTCTCTAAGCAGACAACAACTTGTCTCCAAGTTATGA 1785 0.4532 VFQLFLLDSAKSIKAVKTSFKLEETMSGMEIWPAEDESSESLPPFNNRSGYDSRTGIYHSLVRLGTKHEIPTKPDLNVAHLVLSQFPQGDLAEARIAFVDAATDKSLSYGELRRSVYSLASALFHGLGVRKGDVLFLLSPNSILFPTICLAVLSIGAVLTTANPLNTESEIAKQVRDSGSKLAISAPEELHKLVSTGVPTMLTYCPSNSGMLSVEELIEGCSCSLELPQVTVVQSDPAAILYSSGTTGVSKGVVLTHQNLISTLKLLFWSVDVSASSDDVFLAFIPMFHVYGLVFFGLGMLCVGVKIIVMQKFDFQAMLLAIQKHKVNNLPAVPPVILALVKYASKAGCDLSSLRRTGTGAAPLSKEVSREFRKMFPWVELRQGYGLTESSAAATFLVSDRDAKARPDSCGQLLPTFCAKVVDIDTGKPLPPQKKGELWLKSTTIMKEYLGNSEATTLTVDSDGWLKTGDLSYIDESGFVYIVERIKELIKHNGYQVAPAELESLLLSHPLIVDAAVIPVEDEATGQIPMAYVVRAAGSELSEDQVIQYVAGQVAPYKKVRRVSFIETIPRSAAGKILRKDLVSLSRQQLVSKL* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2899 594 SUPERFAMILY Acetyl-CoA synthetase-like 94 586 - -
Amo19g2899 594 Gene3D - 488 591 IPR045851 -
Amo19g2899 594 Pfam AMP-binding enzyme C-terminal domain 501 576 IPR025110 -
Amo19g2899 594 Gene3D - 66 487 IPR042099 -
Amo19g2899 594 ProSitePatterns Putative AMP-binding domain signature. 240 251 IPR020845 -
Amo19g2899 594 CDD 4CL 70 582 - -
Amo19g2899 594 PANTHER AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN-RELATED 43 593 - -
Amo19g2899 594 Pfam AMP-binding enzyme 94 491 IPR000873 -
Amo19g2899 594 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 43 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2899 Amo-Chr19 134273901 134276308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2899 46 590 Monolignol Biosynthesis Gene Families AT1G20480 44.681 1.50e-150 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2899 K10526 - gmx:100796728 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2899 19 134273901 134276308 Amo19g2899 19 134273901 134276308 ECH
Amo19g2899 19 134273901 134276308 Amo09g2636 09 104106587 104108994 hybridization