Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2897 ATGAGTCGAATACTCGGTCCCGGTTTCCGCTTCCACCCTACGGACGACGAACTAGTTCAATACTATCTCCGCCGGAAGGTCATCGGAAAACTCAACCACCACGACCACATCGGCGTCATCAATATCTACGACTATGAGCCATGGCAACTCCCCGAATTGTCGAAGCTGAATACTAGRGATTTGGAATGGTATTTCTTCACGGTTCTGGACAAGAAGTACGAGAAGGGGGAGAAGACAAAACGCGCCACCGTCAACGGTTACTGGAAGACCACCGGCAAGGATCGTGRAATCAAGTATGGCGATCGCCAAGTAGGCATGAAGAAGACCCTCGTTTACCATGAAGGAAGGGCCCCGACTGGCAAAAGATCAAATTGGGTTATGCACGAGTACCGGATGGTCGATGAGCAATTGGCGGAAGTCGGATATCAGCTGGACGCTTTTGTGCTGTGTAGAATTTTTGAGAAGAGCGGGATGGGCCCTAAGAATGGAGAGAAGTATGGTGCTCCCTTTAGAGAGGAGGACTGGGTGGAGGATGGCGACCTGCTTGAACCGATTGCTGATGAACCTGTGGTTGAGCTGTCTGTTGACCAGAGTGATGCTTTCCTTGAAACTGATGACCTTGAGAAGAAACTTGGTACGCATGTGGTTGATGGAAGTGCTGATTTACCACCAAACCCTCCCAACTACTTTTATGGGGAGTGTAGTCACTATCCTCAGCATCAAGAAGAATTTGTTGAAGTTCCGAAACCTTTGGAAGGTACTGAAGGCCGGAATTTCGATGTAACTGGGCCATATGCTGAGGATACCTGTTTAGAAAATCATGAAATGAACCATAATGGGAATTCTTCAGGATTCATTTATGGTGATGTTAATTCAGATGAAATCATGGATTCCATTGTTGATCCTCTGATTGGTGCTGAATTATTCCTGGAAACAGATGATCTTCTGAACCCAATCGAGGGAAATTCCTCTGGGGCAGATCCTTATACAGTTGAGGGAAATCACCCCAGGGCCGATCCCTACGCAGCTGAGGGAAATCCCCCTGGGCCAGATCCCTACACAGCTGAGGGAAATTATCCTGGGACAGATCCTTATGCTGTGGATATGTTAGATGAGTATCTTGCACTTCCAGATGATGATATTCTGAGGTATATATCCTTTGATGATTCTCCTCCATCAATGGAGGGTGAAAACCCTATTCTAGAGCAGATACCACCTCTTATACAGCAGAATGTGGAGGAAGAGGCCAAGGATGTTTCAGAGGAGAAACAACAAAAGGTGGAGGGAGAAGCCACAAATATTTTCAAGACAAACAAACATGACCTTGAAGCAAATTCTAGCCGTGGAGGATCTGCTTCAGATGATGCAAATCCAATTGCAAAACGCTTCAAGAAATGGTTGGAAGACATCCCAGCTGCTCCCGCATTTGCTGCAGAGCTTCCATCCAAGAAGGATGCACTCCAGCTTCATTCTGCACCTCAGTCTTCAAATACTACTCATGTAACTGCAGGAATGGTCAGCATTACAAACATTACTGGAAGAGGCAATGACATGAATCCGATGGTGGCAAAGATTGGAGGAGGGTTCAACCATCCCATTATCTCTGCTGTTGTTTTGATACCTGTTTCTGGCTTACTTTGTGGCAAGACTCTGTTTGTGCTGACATATGGATGGGCTTTTCTGGTGACATTTTCATTTCTGTTTGCCACCGTGACTTGCAAAATTGGAACCTTCATGTATTCTGGAAAATGA 1752 0.4606 MSRILGPGFRFHPTDDELVQYYLRRKVIGKLNHHDHIGVINIYDYEPWQLPELSKLNTRDLEWYFFTVLDKKYEKGEKTKRATVNGYWKTTGKDRXIKYGDRQVGMKKTLVYHEGRAPTGKRSNWVMHEYRMVDEQLAEVGYQLDAFVLCRIFEKSGMGPKNGEKYGAPFREEDWVEDGDLLEPIADEPVVELSVDQSDAFLETDDLEKKLGTHVVDGSADLPPNPPNYFYGECSHYPQHQEEFVEVPKPLEGTEGRNFDVTGPYAEDTCLENHEMNHNGNSSGFIYGDVNSDEIMDSIVDPLIGAELFLETDDLLNPIEGNSSGADPYTVEGNHPRADPYAAEGNPPGPDPYTAEGNYPGTDPYAVDMLDEYLALPDDDILRYISFDDSPPSMEGENPILEQIPPLIQQNVEEEAKDVSEEKQQKVEGEATNIFKTNKHDLEANSSRGGSASDDANPIAKRFKKWLEDIPAAPAFAAELPSKKDALQLHSAPQSSNTTHVTAGMVSITNITGRGNDMNPMVAKIGGGFNHPIISAVVLIPVSGLLCGKTLFVLTYGWAFLVTFSFLFATVTCKIGTFMYSGK* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2897 583 SUPERFAMILY NAC domain 5 155 IPR036093 GO:0003677|GO:0006355
Amo19g2897 583 Gene3D NAC domain 14 158 IPR036093 GO:0003677|GO:0006355
Amo19g2897 583 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 346 578 - -
Amo19g2897 583 Pfam No apical meristem (NAM) protein 7 132 IPR003441 GO:0003677|GO:0006355
Amo19g2897 583 ProSiteProfiles NAC domain profile. 5 155 IPR003441 GO:0003677|GO:0006355
Amo19g2897 583 MobiDBLite consensus disorder prediction 319 364 - -
Amo19g2897 583 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 4 255 - -
Amo19g2897 583 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 346 578 - -
Amo19g2897 583 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2897 Amo-Chr19 134226489 134230158 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2897 5 572 NAC Transcription Factor Family AT5G04410 35.821 2.98e-93 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo19g2897 NAM 2.5e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2897 19 134226489 134230158 Amo19g2897 19 134226489 134230158 ECH