Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2895 ATGGGTCGTGAAACCCTTCTTCATCCACCACCACCATCCACCACCACCGCAACAGCCACACACACCCCACCACCGCCGCCGCCACTGCCGTCTCTACCTTCATTGACCCAAGCAGGACCATCAGGAGGAGTATCAGCATCTGCACCTTCACCATCTGCTTCACCTTCTTCTCCTGCTATTGTTGCTACTACTGCTGTGGCTACTGCAGTTGCTGCTCCTCCTACCTCTCTTGCTCCTGGTTTCAGGTTCCATCCTACGGATGAGGAGCTTGTTATCTATTACCTCAAGCGCAAGGTTTGTGGCAAAAGCTTCCGATTTGATGCAATTTCTGAGGTTGACATCTACAGGAGCGAACCCTGGGACCTTGCAGATAAGTCGAGGTTGAAGACTAGGGACCAAGAATGGTACTTCTTTAGTGCACTGGACAAGAAGTATGGCAATGGTGGGAGGATGAACAGGGCCACAAGCAAAGGATACTGGAAGGCTACAGGGAACGATCGTCCGGTTAAGCATGAACAAAGGACCGTGGGGTTGAAGAAAACTCTGGTGTTCCATAGTGGAAGAGCCCCAGATGGTAAGAGGACCAATTGGGTCATGCATGAGTACCGACTCGTCGACGAAGAGCTGGAGAGGGCTAGGTCTGGATCCTCTCAGCCTCAGGATGCATATGTTTTGTGTAGAGTTTTTCACAAAAATAACATAGGACCTCCGAATGGGCAACGTTATGCACCTTTCGTTGAAGAGGAGTGGGATGATGCATCGGCATTGGTTCCTGGGGCAGAACCTGTAGAGGATGTTACCGTTACTGTTGCTCATCCTCTACGCATTGAAAGCAACGGTCGCACTTTATGCAGCGACAGGAGAAACAATGTTGCACAGGATACTCAATCTAACAACAAAGTTCCATTTGATGTGAACAAGCTTCCCATTGAGACTCAAAGTCTGCTAGCTGTCTGCAAAAGGGAGAGTATGGCCGAGTTTCCATCACCTGAAAAGGAGGATAACTCGAAGCGTCAGATTGATGAGTATCCTTTGCCACAAACAGAAAACACCAAGCCTATCTCCCAAATATACAAAAGGAGGAGGCATTATTTGAATGTCAACCATTCAAATGTCAACGGAGATTCAGTCCGAACCATCCAAGAACCGCCATGTTCATCAACAATAACCACCGCCGCAACGACGCTCCCGACGGCCACCACCACAGCCTCCACTGCGATAACCAACGTTGCACCCAAAAAACATTTCTTGTCTGCACTGGTGGAGTTTTCCTTGATGGAATCCCTCGAATCGAAGGGAAATCCATCCGTTCAACCACCAGAGTTTGATGATGCTTCCTTAGAGGCATCCGTGCCGCCAAATTGTGTTAAGCTCATCAAACGCATGCAGGGCGAGATTTACAAACTTTCCGAGGAAAGGGAGACTATGAGGTTTGAGATGATGAGCGCACAAGCAATGATTAACATGCTCGAGTCGCGCATTGAAATTTTGAGCAAAGAAAATGAGGAACTGAAGAGCATGATTAACAACAATCCTTAG 1539 0.4841 MGRETLLHPPPPSTTTATATHTPPPPPPLPSLPSLTQAGPSGGVSASAPSPSASPSSPAIVATTAVATAVAAPPTSLAPGFRFHPTDEELVIYYLKRKVCGKSFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGNDRPVKHEQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVDEELERARSGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFVEEEWDDASALVPGAEPVEDVTVTVAHPLRIESNGRTLCSDRRNNVAQDTQSNNKVPFDVNKLPIETQSLLAVCKRESMAEFPSPEKEDNSKRQIDEYPLPQTENTKPISQIYKRRRHYLNVNHSNVNGDSVRTIQEPPCSSTITTAATTLPTATTTASTAITNVAPKKHFLSALVEFSLMESLESKGNPSVQPPEFDDASLEASVPPNCVKLIKRMQGEIYKLSEERETMRFEMMSAQAMINMLESRIEILSKENEELKSMINNNP* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2895 512 MobiDBLite consensus disorder prediction 35 58 - -
Amo19g2895 512 MobiDBLite consensus disorder prediction 1 58 - -
Amo19g2895 512 MobiDBLite consensus disorder prediction 325 340 - -
Amo19g2895 512 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 69 509 - -
Amo19g2895 512 MobiDBLite consensus disorder prediction 16 34 - -
Amo19g2895 512 ProSiteProfiles NAC domain profile. 77 231 IPR003441 GO:0003677|GO:0006355
Amo19g2895 512 PANTHER NAC DOMAIN-CONTAINING PROTEIN 78-LIKE 69 509 - -
Amo19g2895 512 Coils Coil 480 507 - -
Amo19g2895 512 MobiDBLite consensus disorder prediction 325 354 - -
Amo19g2895 512 Pfam No apical meristem (NAM) protein 79 204 IPR003441 GO:0003677|GO:0006355
Amo19g2895 512 Gene3D NAC domain 86 234 IPR036093 GO:0003677|GO:0006355
Amo19g2895 512 SUPERFAMILY NAC domain 67 232 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2895 Amo-Chr19 134195754 134201919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2895 420 505 NAC Transcription Factor Family AT3G10480 41.111 1.83e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo19g2895 NAM 5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2895 - - adu:107466647 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2895 19 134195754 134201919 Amo09g2632 09 103990326 103996724 hybridization