Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2883 GAGCTCAGAGGACCTTCTCGCATGGCGAAAACGAGACCAGGGAAAAGAGACTTGGACTCGTACACCATCAGAGGCACCAACAAGATCGTAAGAGAGGTAACCAAGAACAAAAAAAAAAAATCTTGGTTGACTGCCGTTTTGATGCGTCCTTCGGACACATCGAAGCCACCGTACGTGGCGAGAGTGGAGAAGATCGAGTCCGATAGTAGGAACAACGTGAAGGTTCGTGTGAGATGGTACTATAGGCCTGAAGAGTCCATTGGTGGAAGGAGACAGTTCCATGGGGCAAAGGAGCTTTTCTTATCTGATCATTATGACATTCAGAGTGCTCACACCATTGAAGGGAAGTGTGTTGTTCACTCCTTCAAGAACTACACAAAGCTTGAGAATGTGGGTGCCGAAGATTACTACTGTAGGTTCGAGTACAAGGCTGCTACTGGAGCTTTTACCACCCGACCGCGTCGCTGTGGTATTGGCAAGTGTGAGATGCCTTATAACCCGGATGACCTCATGGTGCAGTGTGAGGGATGCAAGGATTGGTACCATCCTGCATGTGTGGGAATGACTATTGAAGAAGCAAAGAAGTTGGATCACTTTGTATGTTCTGAATGTTCATCTGATGATGACATGAAGAAACCCCAGGCTACATTTCCAGTGTCACCAGGATCTGATGGCACACGGCTTGAGATTTTTTTATCTTTTTCCTACGGAATGTTTCAATGCCTACCTACTTTTACATACTATTCCCACAATAGAGGGGGTAGACATGCTTGTTTAGAAAGTGAAATTCCATCCGAGCGACGGAAGAGGATGACCATCAAGTTTTATGACTTATCAGTTTCTCCTTTTGCTGTCCAGAAAGAGTTAGCTCCGGTCTCAAGTGTTAATGTCTCTGAGATAACATCAAAACCTCAAACTATGGAGTAA 927 0.4531 ELRGPSRMAKTRPGKRDLDSYTIRGTNKIVREVTKNKKKKSWLTAVLMRPSDTSKPPYVARVEKIESDSRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDIQSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTTRPRRCGIGKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDMKKPQATFPVSPGSDGTRLEIFLSFSYGMFQCLPTFTYYSHNRGGRHACLESEIPSERRKRMTIKFYDLSVSPFAVQKELAPVSSVNVSEITSKPQTME* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2883 308 Pfam PHD-finger 161 206 IPR019787 -
Amo19g2883 308 Pfam BAH domain 45 149 IPR001025 GO:0003682
Amo19g2883 308 Gene3D - 13 153 IPR043151 -
Amo19g2883 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 217 IPR013083 -
Amo19g2883 308 PANTHER OS08G0421900 PROTEIN 8 240 - -
Amo19g2883 308 ProSiteProfiles Zinc finger PHD-type profile. 153 207 IPR019787 -
Amo19g2883 308 PANTHER BNAC03G64850D PROTEIN 8 240 IPR045205 GO:0006325|GO:0035064
Amo19g2883 308 SUPERFAMILY FYVE/PHD zinc finger 160 208 IPR011011 -
Amo19g2883 308 ProSiteProfiles BAH domain profile. 38 153 IPR001025 GO:0003682
Amo19g2883 308 SMART PHD_3 155 205 IPR001965 -
Amo19g2883 308 SMART BAH_4 41 153 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2883 Amo-Chr19 133541278 133544853 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2883 48 149 Core DNA Replication Machinery Family AT4G14700 29.126 5.51e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo19g2883 BAH 7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2883 K25868 - gmx:100800993 393.275