Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2878 ATGTTTTCAAGGTTGGTACATCCCTGCGGCGGTGGCGGTGATGGCGACGGAGTGGAAGAGATGATGGTGCAGGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAGAGCCGTCTCTGGTTTTGACCTCTGATCCGAAGCCTCGGCTTCGTTGGACCACGGACCTCCATGAACGCTTCGTTGATGCTGTCACTCAACTCGGCGGTGCCACCAAAGCCACACCAAAAGCGATTTTGCGGACAATGAATGTCAAGGGTTTGACTCTATATCACTTAAAGAGTCATCTGCAGAAATACAGGCTTGGTAAGCAATCTGGAAAAGATTTTGATGAGGGATGCAAAGATGCTTCGTACCCTCTGGAAAGCCCCAGTACAAATAACTCATCTCCTAAGCCGTCTTATGATGCTAATGAGGGCCAAGAAGTAAAGGAAGCATTAAGGGCACAAATGGAAGTGCAAAGTAAACTACATTTGTTAGTGGAGGTACTGTTGCAGGCAGAGAAGCACTTGCTAATTTGCCAGGATGCTGAACAGACATATATGGTCATGCTTGAGAGAGCTTGCAAGATGTTGGCTGATCAAATTATTAGCAATCCAATGGTCGACACAGGTAGCCAAAGGTTGGAAGGATTGCATGTTTCGGAACTGCCGGTGCCGTCGCTTATTCTGCTGCCCCAGGGAACTGAAAGCTGCCTAACATCACTTGAGAATCTCGGAGGATTGACGCTGGAAGGATCTCCAAGCGGGGCAAGGAAGAGAATTCTGAATTTAGACTCAGTGGTAGCTCCTTTGATGTGGAACGAAGCTAACATGAGAACTCAGGGTATCCATTCAAGTCAAGTGAATCCTCATCACGAAATAACTGGGTATGGTATGTAG 879 0.4835 MFSRLVHPCGGGGDGDGVEEMMVQGGGGGGGGGGGGEPSLVLTSDPKPRLRWTTDLHERFVDAVTQLGGATKATPKAILRTMNVKGLTLYHLKSHLQKYRLGKQSGKDFDEGCKDASYPLESPSTNNSSPKPSYDANEGQEVKEALRAQMEVQSKLHLLVEVLLQAEKHLLICQDAEQTYMVMLERACKMLADQIISNPMVDTGSQRLEGLHVSELPVPSLILLPQGTESCLTSLENLGGLTLEGSPSGARKRILNLDSVVAPLMWNEANMRTQGIHSSQVNPHHEITGYGM* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2878 292 MobiDBLite consensus disorder prediction 112 140 - -
Amo19g2878 292 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 47 102 IPR006447 GO:0003677
Amo19g2878 292 Pfam Myb-like DNA-binding domain 50 100 IPR001005 -
Amo19g2878 292 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Amo19g2878 292 Pfam MYB-CC type transfactor, LHEQLE motif 141 190 IPR025756 -
Amo19g2878 292 Gene3D - 46 104 - -
Amo19g2878 292 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 208 291 - -
Amo19g2878 292 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 211 - -
Amo19g2878 292 MobiDBLite consensus disorder prediction 1 39 - -
Amo19g2878 292 MobiDBLite consensus disorder prediction 119 135 - -
Amo19g2878 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 104 IPR017930 -
Amo19g2878 292 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 208 291 IPR044848 GO:0003700
Amo19g2878 292 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 211 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2878 Amo-Chr19 133354287 133356315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2878 36 265 G2-like Transcription Factor Family AT3G24120 43.902 1.00e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo19g2878 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2878 - - aip:107619379 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2878 19 133354287 133356315 Amo09g2620 09 103735167 103736351 hybridization