Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2850 ATGTCCGATTCCACTTCCAACTCCGACTCCGATAACGAAAACTTTGTTTTAACGATGATAATTCATAACTCCAACGACAGTGCTTTTCGTTTCACTCATGCCATGGCATTCATATTTGGCTTGATATTCTTGTTTAAGACCATAAATTTCTTACATTCTTGCTTTTTCAGGCCTCCAAGAATCCCCACCATACTCCACGCACCGGTCGATGTTCCATCACCCTACGTGTCCGTGTCAGTGGCCGAGTCYYTAGAGCACGGTCACWKSCAYGGCCACRTRGACGGTCACATCGACACGGGTTACGAGAATTCCCCTAAGATGTCATATTCTGATGAAGTAATGAAGAAAAGTAGTGTTGGAGGTGGATGCATCATATGCTTAGGGGATTACAAAGAGATTGAGATGTTGAGGGTTCTTCCAGGTTGTGGCCATGTCTTTCACCAAGCTTGTGTTGATCCATGGCTCATGTTACACTCCACATGCCCCATATGCCGAAAATCATTGCCACATGCACCATAG 519 0.4451 MSDSTSNSDSDNENFVLTMIIHNSNDSAFRFTHAMAFIFGLIFLFKTINFLHSCFFRPPRIPTILHAPVDVPSPYVSVSVAESLEHGHXHGHXDGHIDTGYENSPKMSYSDEVMKKSSVGGGCIICLGDYKEIEMLRVLPGCGHVFHQACVDPWLMLHSTCPICRKSLPHAP* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2850 172 Pfam Ring finger domain 123 165 IPR001841 -
Amo19g2850 172 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 23 168 IPR045899 -
Amo19g2850 172 SUPERFAMILY RING/U-box 122 169 - -
Amo19g2850 172 SMART ring_2 123 164 IPR001841 -
Amo19g2850 172 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Amo19g2850 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 171 IPR013083 -
Amo19g2850 172 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 23 168 - -
Amo19g2850 172 CDD RING-H2_PA-TM-RING 123 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2850 Amo-Chr19 132292818 132293336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2850 101 167 C3H Transcription Factor Family AT5G06490 56.716 4.47e-21 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2850 - - adu:107466495 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2850 19 132292818 132293336 Amo09g2569 09 102954277 102954795 hybridization