Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2846 GATGTGAAAACCCTAGCCTCCATCGCGCCGCCATCAATCTCACCGTCGCCACTCGTCGCGCTCAAGATCGGCACTAGGTTTGTCGTGGTCGTTCGCAATCCTCATGGTTCGTCGTTCTCGAGGGCCCTCGATCCCCTCCGTCCCCGGCGTGTTCAGTCTCACTGCATCCCGCGAGTGCTGGAGGGCCGCCACGTGCTCGGCATCAATGAAACTGGCAGCGACAAGACCACCGCTTTCGCCCTCCCGATCGTCCACCGCCTGTCGGAGCACCCGTTCGGTGTGTTCGCGTTGGTGGTGATGTCCACTAGGGAACTGGCATTCCAGCTAGCAGAGCAGTTCCGCGCCCTCGGTTCCTGCCTCCACCTCCGCATTGCAGTGGTTGTCAGCGGCATGGATATGCTTCGGCAAACCAAGGAGCTTGCTGCTAGGCCCCACGTCATTATTGCCATGCCGGGGAGGATCAAGGCCTTGCTCGAGAATCCTGATATTCCTCTAGTTTTTGCTAGAACTAAGTTCCTTGTCCTGGATGAAGCAGATCGAGTTCTTGATGTCAGTTTTCAGGAGGAATTGAAATTTATTTTTAAGTGCTTACCAGAAAATCGGCAAAATCTATTCTTTTCTGCAACAACCACAAGTAATGGAAGATATGGACATCCGATCTGCCATTGTATTTATCTCTACATGCAGATGGAGAGGGAGGAGCTGAATTTGAACAAAGAGAGTAATAACAACAATGTTGGAGGTAATAATAGTAGGAGTGGCGGTGGTGGCTTCATTGATAGAAGCAAAGTTAGGATTTTGTTGTGTGATAACGATTCCAAGAGTTCCGAAGAG 834 0.5144 DVKTLASIAPPSISPSPLVALKIGTRFVVVVRNPHGSSFSRALDPLRPRRVQSHCIPRVLEGRHVLGINETGSDKTTAFALPIVHRLSEHPFGVFALVVMSTRELAFQLAEQFRALGSCLHLRIAVVVSGMDMLRQTKELAARPHVIIAMPGRIKALLENPDIPLVFARTKFLVLDEADRVLDVSFQEELKFIFKCLPENRQNLFFSATTTSNGRYGHPICHCIYLYMQMEREELNLNKESNNNNVGGNNSRSGGGGFIDRSKVRILLCDNDSKSSEE 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2846 278 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 228 IPR014001 -
Amo19g2846 278 Pfam DEAD/DEAH box helicase 50 212 IPR011545 GO:0003676|GO:0005524
Amo19g2846 278 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 174 182 IPR000629 -
Amo19g2846 278 SMART ultradead3 44 242 IPR014001 -
Amo19g2846 278 Gene3D - 37 218 IPR027417 -
Amo19g2846 278 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 45 213 - -
Amo19g2846 278 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 213 IPR027417 -
Amo19g2846 278 PANTHER RNA HELICASE 45 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2846 Amo-Chr19 132176528 132178061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2846 48 221 Eukaryotic Initiation Factors Gene Family AT5G11200 31.461 8.73e-22 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2846 K14778 - gmx:100798597 281.952