Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2840 ATGGGTTATAAGTTGATAAAGAGTTTTCTTAGAAGCTTCGGGAATAATGGTGTTGTTTCAAGATTTAATAACACTTTTGTGGTGGATGAGTTCACAGTTGCAGCCACCATTTGGGTTGATTTTGATGATGTGGATTCAATCAGAGCCAAAGTTTCTTATGCCAAGGAAAAGGGACTTCTTGGCTACAGTGTGTTCCAACTTGCCAACGATGACAATTGGATCCTTTCAAAGGCAGCTCAAGAAGTAGATGAAGATCATCATAAGAGGAGGTTGTTGATAATTGTTCTGCTATCAACAGTAACTGTCATAATTCTGTTGGGAATAGTGTTTTGCTACTGCCACAGAGGAACCGCAGCCACCATTACAAAAGCATTATACAAAATAAGGAAATGTTTATCAGGAGCTGAACAAGATCATGTAGAAGGGAATGGTTCTGACTTGACTGCATTCAGTTATCTCACAATCAAAATGGCAACAAATAACTTCTCAAGAGATAATAAACTTGGAGAGGGTGGATTTGGCACGGTTTATAAGGGAAAATTACGAAAGGGGGAGGAGATAGCTGTGAAAAGGCTCTCAGAAAGCTCGAATCAAGGCCTAGAAGAGTTAAAAAATGAAATCGCGCTTACGGCAAGATTACAACATGTGAATTCGGTTAGACTTCTGGGTTACTGCACAAAAAGGGATGAGAAGATTTTGATCTATGAATACCTACCAAACAAAAGCTTAGATCATTTTCTCTTTGATCCAAGGAAATCAATTCTTTTAGACTGGAGCAAGCGCGCCAACATCATTGAAGGGGTTACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTCACCATAATCCACCGAGATCTCAAAGCCAGTAATATTTTATTAGACCATAATATGAATCCCAAGATATCAGATTTTGGGATGGCAAGAATTTTCAGGAAATATGACCTTGAAGCAAACACAAGCAGGATTGTTGGGACATACGGTTATGTACCTCCTGAGTATGTGAGAAAAGGCATATACTCAACGAAGTACGATGTTTATAGCTTTGGAGTTCTTCTGTTGCAAATCATAAGTGGGAAGAGGACTTCATGTTACTATGGACCACATGAAAATATGAACCTGTTGGAATATATATGCGGCCGAGGGAGATCCGGCTGGTCATGA 1167 0.3933 MGYKLIKSFLRSFGNNGVVSRFNNTFVVDEFTVAATIWVDFDDVDSIRAKVSYAKEKGLLGYSVFQLANDDNWILSKAAQEVDEDHHKRRLLIIVLLSTVTVIILLGIVFCYCHRGTAATITKALYKIRKCLSGAEQDHVEGNGSDLTAFSYLTIKMATNNFSRDNKLGEGGFGTVYKGKLRKGEEIAVKRLSESSNQGLEELKNEIALTARLQHVNSVRLLGYCTKRDEKILIYEYLPNKSLDHFLFDPRKSILLDWSKRANIIEGVTQGLLYLQEYSNFTIIHRDLKASNILLDHNMNPKISDFGMARIFRKYDLEANTSRIVGTYGYVPPEYVRKGIYSTKYDVYSFGVLLLQIISGKRTSCYYGPHENMNLLEYICGRGRSGWS* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2840 388 Gene3D Phosphorylase Kinase; domain 1 136 237 - -
Amo19g2840 388 Gene3D Glycosidases 9 95 - -
Amo19g2840 388 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 379 - -
Amo19g2840 388 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 1 86 IPR001223 GO:0005975
Amo19g2840 388 SMART serkin_6 162 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g2840 388 Gene3D Transferase(Phosphotransferase) domain 1 238 386 - -
Amo19g2840 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 283 295 IPR008271 GO:0004672|GO:0006468
Amo19g2840 388 ProSiteProfiles Protein kinase domain profile. 162 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g2840 388 SUPERFAMILY Protein kinase-like (PK-like) 146 375 IPR011009 -
Amo19g2840 388 ProSitePatterns Protein kinases ATP-binding region signature. 168 190 IPR017441 GO:0005524
Amo19g2840 388 Pfam Protein kinase domain 163 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g2840 388 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2840 Amo-Chr19 132092275 132096442 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2840 150 367 Receptor kinase-like Gene Family AT4G11480 62.844 7.36e-95 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo19g2840 Pkinase 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2840 - - aip:107617480 752.281