Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2828 ATGGCAGGGAACTTCAGATTCACAATGGACCAAAAGGATATTGTTAGAATCTTGACAACAACCATCGATAGTTTCATTCAGGATCGATTAATCGACAAAGAACTAAGAGCTCAGCACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGATGGAAGTTCTGAAAAAGACACTGAGGTAGAGTACTCTGATCAAGCAGTGTTAGCAAATCTTGATTGGGGTATCGAGGCGCTTGAAGAAGCTATCAATACCTATAACACGGAAACTAAGCTTGCGAGACTCGATTATGCTGAGAAGATGCTGCAAGTTTGTGCAATGCTGAATCCTAAGCAAAAGACTGCTGGAGTGCCAAACTTCTACCTTTCAGCTTGGGCACATTTGAACCTATCATACCTATGGAAGTTGAGGAACAACATTCAGAATTGTGTTCTTCATGCCATTGACATGTTCATCGTTGATCCTTTTTTCACTCGGATTGACTTTGCTCCAGAACTCTGGAAAACTCTGTTCCTTCCACACATGAGCTCTATTGTAGGGTGGTATTCAGAGGAGAGGCACAAACTTATGATGGAAGTAATACCTGAAACTTCTGATTTTTCAGTCACAGCTGATTTTGATCAACTTTTCAATGAATCCTTGGTATTCTCTCTGAGGCCAAATCAGTTAGATAAGTTGCAAAAACTGGAGCAGCTTTATGGAGAGTCTTTGGACGAGAACACGCGGCTATATGCAAAGTACTATAAGGACTGCATGAACTCTGATTCCACTACCTCAGGCAAGAAGGTTGTTCCCATGTTGCCAATTGCTGAGCCGCCAATGACTCCTTTGCATGAGTTGAGCAGGTCGGTTCCAGATTATGTGAAATTCGGTCCGATTTTGCCTAAGAGTGCTGGCTTTTCTTTGATGTCAATGCCAAAAGATGGTGTAAATGAAAAAACCAGAGATAAACCATCGAGCCATTCCAAGGTGGAAAACTCATCTATATGGGGTACTAAGGAGAGCATCATTGAAGAGAATGAAAATGAAAATGAAAATGAAGAAGATTCAGATTCTGATCTTGATGATGCATCTGTGGGTTCTCCTAACAAAAATAATGTTTTCTCGCCTGAAAGGAAGGCGATCAAGGACGACAATATTGAGCCAAAAGTGCATCTATCAAACCAAAGGAGTAAAATATACTCTCCTAGTATCTCCTCTCCCTTGGACTCTCCAAGAACTCCTCAAGACAATTCGTCATTAAATCCTCATATGCGCAGCAAAAGAGAGCCGAAGTACTTGCGCTTATTGTCTAGTCGTTTAAGGGATTCGATCATTTCTGACTCTTTAACATCATCACCAGACCTGAGCACTGATCACATTATGAACTCTGATCATGAAATGATGGTGAACATTAAGAAGAAAGACTATAATCGAATTCCATGTATGAGTTATGAAAATGAGGATAGCCTGGTGCTAAATGACAGTTCTTTTTGTGAAAGTGATGAGGGATATCATGGCTGCATTTCATTGCCCAAATTAGAGAAGCAGACTACCGGATCAAAGCCGCCAAAAGATTTTGTATGTCCAATCACAGGTCAGATATTTTGTGATCCTGTTACCCTTGAAACAGGCCAGACCTATGAAAGAAAAGCTATTCAAGAATGGCTTAAAACAGGAAACACAACATGCCCCATCACGCGACAGCCTCTATCCGCAAGCATGTTACCCAAAACAAACTATGTTTTGAAGAGATTGATAACATCCTGGAAGGAACAACATCCTGAACTAGCTCAGGAGTTCTCAAATTCTAACACTAACACACCAAGGGGTTCTTCTTGTTCTCCATTGCTGAAAGACAACTCAATGCTGTCCATTTTACAAAGAACACCCGACTCAATGACTCATAAGAACAAAGAGGATTATATCATACAAAGGAGCAAGAGATTTATACAGGTTGCTGCAACATCTCCAACTAGTGTGCTATCTCAAGCTGCAGTTGAAACAATCATGAATTCCATGAAACCATACATTTCAAGTCTCTGCACATCAGAAAATTTACAAGAATGTGAAGAAGCTGTATTGGAAATTGCTAGATCATGGAAGGATGCAAAGAGTGATCCTCAGATTCATTCTTATTTATCAAAACCAACTGTCATAAACGGTTTAATGGAAATACTTTCAGCTTCTCTGAATGGAGAAGTTCTGAGGACAACAATTTACATCCTTACAGAGCTAATTTTTCTAGACGAAAGTGTCGGAGAGATACTTAACAGTGTAGATTCTGATTTTGATTGTTTGGCTGCTCTGCTCAAGAATGGTTTGGCTGAGGCAGCACTTCTGATTTATCAGCTAAGACCAGTTTTTGCTCAGCTATCAGCCCATGAGCTTATACCGTCTCTAGTCCAAGTGATTCAGAACAAAAATGAGGAGTTGGATGATTTTCAATTAGTTATGGACCCGAAAGATGCCGCCATAGCAATTCTTGAACAAATATTAGCCGGAGGGGATGAATACAGCAGGTCCCTTAATGCTTTGAGTGTTATTTCAGCAAATGGAATTCCGGCATTGGTAAAATATTTAGAGAGGATGGAGGTAAGGACGTCTGTTGTTTCCATACTTTTGTGTTGTATGCAAGCTGAAAGAAGTTGCAAGAACTTGATAGCAAGTCGAGTCGAATTGTCTCCTGTTCTTGAATTATTTCATGGTGGAAATGATAGTGTGAAAGGCGTCTGCGCAGAATTTCTCTCCGAGCTGGTTCAATTGAATAGGAGAACTTTCTGCAACCAAATCTTACAGATAATCAAGGATGAAGGAGCATTTAGTACAATGCATACGTTTCTTGTATATCTTCAGATGGCTCCAATGGAGCATCAGCTTGCTGTTGCCAGTCTTCTTCTCCAGCTTGATCTTCTGGTGGAGCCACGAAAGATGAGCATTTATAGGGAAGAAGCTGTAGAGACACTAATTGAAGCACTTTGGCAAAAAGACTTCTCAAATACTCAAATTAAGGCTTTAGATGCTTTACTATATCTTATTGGACATGTCACTTCCTCAGGAAAGTCATATACTGAAGCCTGGTTGCTCAAGATCGCAGGATTCGATCAGCCTTACAACGCTTTAATGAAGGCCGAACAATTGGGACAACGTGACAATGATTTGGTGGAAACAATGGAGGATGAGAAAAATGCATTGAATTCTTGGCAGAAAAGGGTTGCATTTGTACTTTGCAACCATGAAAATGGTTCAATATTTAAAGCATTGGAAGAATGCTTAAGGAGTACTTCCCTAGAGATGGCAAAATCTTGCCTTGTTCTGGCCACATGGATTACACACATGCTCTCTACGCTTCCTGACACCGGTATAAGGGACGTTGCTCGTGAGTCATTGCTTGACGAATTCATAAATGTTCTACTGTCATCAAAGAACATGGAGGAAAAGATTCTTGCTAACCTAGCTTTGAATACTTTCATTAGTGATCCAATTGCTCATGAAGCACTTGGAGGCTATGCTAAAAGCATTTATAGAACCTTGAGGAAGCTAAAGAAACATTCAGCTGCAGCAGTTGATATTATGAGAATCTTACTAAACTTAAAATCTGTTGATGTGACTGAGTTGTGGAGTTGTAAAGAGGTTGTTGAGTTAGATTTGAGCTCAAACGGAGAAGTTCTTTCTTTGCTTTATCTGAATGGTCAGGTCTTGAGTGGACACTCTGATGGAACTATCAAGGTATGGGATGCAAGGAAGAGAATACCAAGAATCATTCAAGAAACTCGCGAGCACACAAAAGCTGTAACTTCTCTGTGCTCTTCAGGTGATAGACTCTACAGTGGTTCCTTAGACAAAACCATCCGGGTTTGGACTATCAAAGCCAATGAGATTATATGTATAGATGTTCATGATGTGAAGGAGGCAGTGTATGAGTTAACAGCAAATGCTAGATTGGCATGCTATGTGTCTCAAGGAACTGGAGCCAAGGTTTATAATTGGTCAGAGGCTCCAAAGCATATCAATTTCAGCAAGTATGTGAAATGCCTTGCTGTTGCCGGCGACAAATTGTATTGCGGCTGCTCCGGTTACAGCATTCAGGAGGTTGACTTGTCCAAACATACATCATATTCATTCTTCTCTGGTACAAGAAAATTATTGGGAAAACAAACCATACACGCCCTTCAAATTCATGATGGTTTCCTCTATGCCTGTGGATCTTCTGTTGATGCAACTGCAGGAAAGATATTTTCACTCTCCACCAAAATGGTAGTAGGATCACTATCGACTGGACTCGACATCCATCGTGTAGCCATCAACAATGACTTCATATTTGCAGGTACGAAGTTCGGCACCATTGAGGTTTGGCTGAAAGATAAGTTCACCCGGGTTGCTTCCATCAAAATGGCTGGTGGTAACACAAAAATCACATCATTAGTATCAGATGCGGATGGTATGATGCTTTTTGTTGGTTCCTCTGATGGAAAGATCCAGGTTTGGGCCTTGGATTAA 4476 0.4066 MAGNFRFTMDQKDIVRILTTTIDSFIQDRLIDKELRAQHKEQCAERLAAEDGSSEKDTEVEYSDQAVLANLDWGIEALEEAINTYNTETKLARLDYAEKMLQVCAMLNPKQKTAGVPNFYLSAWAHLNLSYLWKLRNNIQNCVLHAIDMFIVDPFFTRIDFAPELWKTLFLPHMSSIVGWYSEERHKLMMEVIPETSDFSVTADFDQLFNESLVFSLRPNQLDKLQKLEQLYGESLDENTRLYAKYYKDCMNSDSTTSGKKVVPMLPIAEPPMTPLHELSRSVPDYVKFGPILPKSAGFSLMSMPKDGVNEKTRDKPSSHSKVENSSIWGTKESIIEENENENENEEDSDSDLDDASVGSPNKNNVFSPERKAIKDDNIEPKVHLSNQRSKIYSPSISSPLDSPRTPQDNSSLNPHMRSKREPKYLRLLSSRLRDSIISDSLTSSPDLSTDHIMNSDHEMMVNIKKKDYNRIPCMSYENEDSLVLNDSSFCESDEGYHGCISLPKLEKQTTGSKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLKTGNTTCPITRQPLSASMLPKTNYVLKRLITSWKEQHPELAQEFSNSNTNTPRGSSCSPLLKDNSMLSILQRTPDSMTHKNKEDYIIQRSKRFIQVAATSPTSVLSQAAVETIMNSMKPYISSLCTSENLQECEEAVLEIARSWKDAKSDPQIHSYLSKPTVINGLMEILSASLNGEVLRTTIYILTELIFLDESVGEILNSVDSDFDCLAALLKNGLAEAALLIYQLRPVFAQLSAHELIPSLVQVIQNKNEELDDFQLVMDPKDAAIAILEQILAGGDEYSRSLNALSVISANGIPALVKYLERMEVRTSVVSILLCCMQAERSCKNLIASRVELSPVLELFHGGNDSVKGVCAEFLSELVQLNRRTFCNQILQIIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQLDLLVEPRKMSIYREEAVETLIEALWQKDFSNTQIKALDALLYLIGHVTSSGKSYTEAWLLKIAGFDQPYNALMKAEQLGQRDNDLVETMEDEKNALNSWQKRVAFVLCNHENGSIFKALEECLRSTSLEMAKSCLVLATWITHMLSTLPDTGIRDVARESLLDEFINVLLSSKNMEEKILANLALNTFISDPIAHEALGGYAKSIYRTLRKLKKHSAAAVDIMRILLNLKSVDVTELWSCKEVVELDLSSNGEVLSLLYLNGQVLSGHSDGTIKVWDARKRIPRIIQETREHTKAVTSLCSSGDRLYSGSLDKTIRVWTIKANEIICIDVHDVKEAVYELTANARLACYVSQGTGAKVYNWSEAPKHINFSKYVKCLAVAGDKLYCGCSGYSIQEVDLSKHTSYSFFSGTRKLLGKQTIHALQIHDGFLYACGSSVDATAGKIFSLSTKMVVGSLSTGLDIHRVAINNDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGNTKITSLVSDADGMMLFVGSSDGKIQVWALD* 1492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2828 1491 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 504 599 IPR013083 -
Amo19g2828 1491 ProSiteProfiles Trp-Asp (WD) repeats profile. 1250 1289 IPR001680 GO:0005515
Amo19g2828 1491 MobiDBLite consensus disorder prediction 339 354 - -
Amo19g2828 1491 MobiDBLite consensus disorder prediction 300 423 - -
Amo19g2828 1491 SMART WD40_4 1448 1489 IPR001680 GO:0005515
Amo19g2828 1491 SMART WD40_4 1200 1238 IPR001680 GO:0005515
Amo19g2828 1491 SMART WD40_4 1243 1280 IPR001680 GO:0005515
Amo19g2828 1491 Pfam U-box domain 516 586 IPR003613 GO:0004842|GO:0016567
Amo19g2828 1491 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1457 1491 - -
Amo19g2828 1491 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1491 - -
Amo19g2828 1491 ProSiteProfiles Trp-Asp (WD) repeats profile. 1457 1491 IPR001680 GO:0005515
Amo19g2828 1491 ProSiteProfiles Trp-Asp (WD) repeats profile. 1225 1238 IPR001680 GO:0005515
Amo19g2828 1491 SMART Ubox_2 518 582 IPR003613 GO:0004842|GO:0016567
Amo19g2828 1491 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1491 - -
Amo19g2828 1491 MobiDBLite consensus disorder prediction 385 414 - -
Amo19g2828 1491 ProSiteProfiles U-box domain profile. 514 589 IPR003613 GO:0004842|GO:0016567
Amo19g2828 1491 SUPERFAMILY ARM repeat 668 1152 IPR016024 -
Amo19g2828 1491 Pfam WD domain, G-beta repeat 1249 1279 IPR001680 GO:0005515
Amo19g2828 1491 Pfam WD domain, G-beta repeat 1222 1238 IPR001680 GO:0005515
Amo19g2828 1491 MobiDBLite consensus disorder prediction 369 384 - -
Amo19g2828 1491 Gene3D - 1187 1491 IPR015943 GO:0005515
Amo19g2828 1491 PRINTS G protein beta WD-40 repeat signature 1225 1239 IPR020472 -
Amo19g2828 1491 PRINTS G protein beta WD-40 repeat signature 1267 1281 IPR020472 -
Amo19g2828 1491 PRINTS G protein beta WD-40 repeat signature 1476 1490 IPR020472 -
Amo19g2828 1491 SUPERFAMILY RING/U-box 513 587 - -
Amo19g2828 1491 CDD RING-Ubox_PUB 519 561 IPR045210 -
Amo19g2828 1491 SUPERFAMILY WD40 repeat-like 1223 1490 IPR036322 GO:0005515
Amo19g2828 1491 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1250 1285 - -
Amo19g2828 1491 Gene3D - 663 944 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2828 Amo-Chr19 131999241 132008458 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2828 516 598 U-box Gene Family AT4G21350 43.820 1.06e-15 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2828 - - gmx:100776142 2420.58