Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2807 ATGACAGCATCTCAAGAAATTTCAAGTTTAGAACTCTTAAGGCAACATCTCTTAGGTGATAATAAGAATAATGCCTTAGATTCATACTTCACTAGCACCACCAATCTCATTCCTCTAGTGAAAATTGAAGAATTAGAACACCCTTTGGAATCACCAAAACTCGACTACCACCAATTCTTGGATTTGGATTCATATTTCTTTGAACAAAGTAGTAGTAGCTTTGATGCTAAGGAAGTCGCTGCTGATCAAAACAATGTCATTATTGCACAAAGCCCCACGGAGGAAGAAATAATCAAGAATTCGGATACTTCGGTTGAACCAACAATGTTGGAGTCTGTGGGGGAGAAGGTAGAAGCTACGTTTAGGCACTACAGAGGAGTAAGGAGAAGGCCGTGGGGAAAGTTCGCTGCTGAGATTCGCGATCCGGCGAGAAAAGGCTCGAGAGTGTGGCTAGGCACATTTGATAGTGAGATTGATGCTGCTAAGGCTTATGATTTTGCTGCCTTTAGGATGAGGGGTCAAAAAGCAATTCTCAATTTTCCTCTTGAGGCTGGTGAATCTGAACCAAAGCCTAATGTTTGTGGTAGGAAAAAGAGAAGAGTAGTGTAG 609 0.4171 MTASQEISSLELLRQHLLGDNKNNALDSYFTSTTNLIPLVKIEELEHPLESPKLDYHQFLDLDSYFFEQSSSSFDAKEVAADQNNVIIAQSPTEEEIIKNSDTSVEPTMLESVGEKVEATFRHYRGVRRRPWGKFAAEIRDPARKGSRVWLGTFDSEIDAAKAYDFAAFRMRGQKAILNFPLEAGESEPKPNVCGRKKRRVV* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2807 202 Pfam AP2 domain 123 173 IPR001471 GO:0003700|GO:0006355
Amo19g2807 202 SUPERFAMILY DNA-binding domain 123 183 IPR016177 GO:0003677
Amo19g2807 202 SMART rav1_2 123 187 IPR001471 GO:0003700|GO:0006355
Amo19g2807 202 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 200 - -
Amo19g2807 202 CDD AP2 123 181 IPR001471 GO:0003700|GO:0006355
Amo19g2807 202 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 200 - -
Amo19g2807 202 ProSiteProfiles AP2/ERF domain profile. 123 181 IPR001471 GO:0003700|GO:0006355
Amo19g2807 202 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Amo19g2807 202 PRINTS Ethylene responsive element binding protein signature 163 183 IPR001471 GO:0003700|GO:0006355
Amo19g2807 202 Gene3D AP2/ERF domain 122 183 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2807 Amo-Chr19 131540858 131542224 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2807 1 200 AP2-EREBP Transcription Factor Family AT5G07580 42.788 8.07e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo19g2807 AP2 4.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2807 - - ccaj:109813158 183.341