Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2750 ATGGCGGATGCACCGACGAGTCCAGCGAACGGGAGCCATGAGAGTGGAGGAGAGCAGAGCCCGCAGGAGTCTTCTTCCGGCGGCCTATGTGGTGCAGGAGCAAGGGAGCAGGACAGGTTCCTCCCTATCGCCAACATCAGCAGGATCATGAAAAAGGGGCTCCCTGCCAATGGCAAGATCGCCAAGGACGCCAAGGACACAATGCAGGAATGCGTTTCGGAATTCATCAGCTTCATCACCAGCGAGGCATGTGAGAAGTGCCAGAAAGAGAAGAGGAAGACCATTAATGGAGATGATTTGTTATGGGCGATGGCCACTTTAGGATTTGAAGACTACATAGAACCTCTTAAAGTGTACCTAGCAAGATTCAGAGAGTTGGAGGGTGACACCAAAGGATCTGCTAGAACTGGCGATGGATCTGTTAGACGAGATCAAGTTGGTCTAGCGGGTCAAAATACTCAGCTTGTTCATCAGGGTTCACTGAATTATATTAGTTCCCAGGTGCAGCAACAACATTTGGTTATTCCTTCAATGCAAAGCCATGAATAG 549 0.4973 MADAPTSPANGSHESGGEQSPQESSSGGLCGAGAREQDRFLPIANISRIMKKGLPANGKIAKDAKDTMQECVSEFISFITSEACEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARFRELEGDTKGSARTGDGSVRRDQVGLAGQNTQLVHQGSLNYISSQVQQQHLVIPSMQSHE* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2750 182 SUPERFAMILY Histone-fold 37 163 IPR009072 GO:0046982
Amo19g2750 182 Gene3D Histone, subunit A 31 170 IPR009072 GO:0046982
Amo19g2750 182 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
Amo19g2750 182 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Amo19g2750 182 PRINTS CCAAT-binding transcription factor subunit A signature 106 124 - -
Amo19g2750 182 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 162 - -
Amo19g2750 182 ProSitePatterns NF-YB/HAP3 subunit signature. 71 87 IPR003956 GO:0005634|GO:0006355|GO:0043565
Amo19g2750 182 MobiDBLite consensus disorder prediction 1 33 - -
Amo19g2750 182 MobiDBLite consensus disorder prediction 8 27 - -
Amo19g2750 182 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 162 IPR027113 GO:0001228|GO:0006355|GO:0016602
Amo19g2750 182 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 40 104 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2750 Amo-Chr19 129742003 129745348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2750 11 176 CCAAT-HAP3 Transcription Factor Family AT2G37060 69.461 3.98e-79 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Amo19g2750 CBFD_NFYB_HMF 1.6e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2750 K08065 - gmx:100779577 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2750 19 129742003 129745348 Amo09g2518 09 102036940 102040035 hybridization