Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2722 ATGGAGCAGGAAGAACACGAAGTGTACGGTGCCGACATCCCCGACGAAGCTGACATGGACGCCGACGCCGACCTTCAGGAACACGARGACGACCATGACAACAACCACCATGCCTCCTCTCACGCTAACAAGCAGGACTTGGAGGACATGAAGAAGAGGCTGAAGGAGATTGAGGAAGAAGCTAGCGCCCTACGTGAAATGCAGGCCAAGGTCGAGAAAGAGATGGGCGCTGTTCAAGATTCAACTGGATCTTCTGCAAGTCAAGCTGAAAAGGAGGAAGTGGATTCTCGATCAATCTATGTTGGTAATGTTGACTATGCATGCACACCTGAAGAAGTTCAACAGCATTTTCAGTCGTGTGGAACTGTGAACAGAGTTACAATATTGACAGACAAATTTGGGCAGCCAAAAGGATTTGCTTATGTAGAGTTCGTTGAGATAGATGCTGTTCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTGAAGGTGTCTGCTAAGCGTACAAATGTTCCTGGGATGAAACAGTATTTTGGAAGACGACCTGGGGGTTTCCGATCCAGGAGGCCTTTCATGCCTGCTCCATTCTATCCACCATATGGTTATGGAAGGGTCCCAAGGTTTAGAAGACCTACTCGATACAGGCCATACTAG 666 0.476 MEQEEHEVYGADIPDEADMDADADLQEHEDDHDNNHHASSHANKQDLEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSTGSSASQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYFGRRPGGFRSRRPFMPAPFYPPYGYGRVPRFRRPTRYRPY* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2722 221 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 167 IPR000504 GO:0003723
Amo19g2722 221 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 220 - -
Amo19g2722 221 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 3 220 - -
Amo19g2722 221 MobiDBLite consensus disorder prediction 1 95 - -
Amo19g2722 221 SMART rrm1_1 98 169 IPR000504 GO:0003723
Amo19g2722 221 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 173 IPR000504 GO:0003723
Amo19g2722 221 SUPERFAMILY RNA-binding domain, RBD 87 194 IPR035979 GO:0003676
Amo19g2722 221 CDD RRM_II_PABPs 98 169 - -
Amo19g2722 221 MobiDBLite consensus disorder prediction 28 73 - -
Amo19g2722 221 Coils Coil 40 74 - -
Amo19g2722 221 Gene3D - 13 179 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2722 Amo-Chr19 129047036 129050873 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2722 98 169 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 6.69e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2722 K14396 - gmx:100527545 345.51