Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2717 ATGTATTGGGGAGGGAACATGGGAATGGGATGGGGTGTTATGATAGAAGAGGAAGTTGGAGGAGGAGGATGGAGGAAGGGTCCTTGGACTGCTGAGGAAGATAGATTGCTCATTGAATATGTCAAGATTCATGGCGAAGGTCGATGGAACTCTGTTGCTAGGCTTGCAGGACTGAAGAGGAATGGAAAGAGTTGCAGGCTGAGATGGGTGAATTACCTGAGACCAGACCTCAAGAGGGGTCAGATAACACCACAAGAAGAAAGCATCATTCTTGAACTCCATGCTAGATGGGGAAACAGGTGGTCGACAATTGCGAGAAGCTTGCCGGGAAGAACGGACAACGAGATCAAGAACTATTGGAGAACTCATTTCAAGAAAAAGGTTAAGAATCCATCTGACGCCGCCGAGAAGGCGAAAAACCGCCTCTTAAGGCGGCAGCAATTTCAGCAGCAGCAACAATTGAAGCAGCAGCAGCAGCAAATTCAACAACAGCAACAACAAGTTCAATTCAACTTGGACATGAAGGGGATCATGATGATGAACTTGCTTGAGATGGAAAATCATAATAATGACCATAGAAGAGTCCCTTCAATTTCTCATCAACAAGAGCCACAAGACATGTACCAACAACAAAGCTCAACAGAAGAAGAGCATGGATACTTCTACCACCCCATGTTCATCAATAACATTAATGGCAATAATAATGATAACTACTCACCAGCTGCAACAGAATCATCAAGTGAGGAAATCTTGTGGGATGGACTTTGGAACTTGGATGATGTTCTTGGCAATTTCACTGCAGCCAGTGCTACGAGCAAGCCAACAACTTTAGTTGCTCCATTTTGCTAA 849 0.4452 MYWGGNMGMGWGVMIEEEVGGGGWRKGPWTAEEDRLLIEYVKIHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKVKNPSDAAEKAKNRLLRRQQFQQQQQLKQQQQQIQQQQQQVQFNLDMKGIMMMNLLEMENHNNDHRRVPSISHQQEPQDMYQQQSSTEEEHGYFYHPMFINNINGNNNDNYSPAATESSSEEILWDGLWNLDDVLGNFTAASATSKPTTLVAPFC* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2717 282 SUPERFAMILY Homeodomain-like 24 120 IPR009057 -
Amo19g2717 282 Pfam Myb-like DNA-binding domain 79 123 IPR001005 -
Amo19g2717 282 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Amo19g2717 282 Gene3D - 26 78 - -
Amo19g2717 282 PANTHER MYB TRANSCRIPTION FACTOR 1 273 - -
Amo19g2717 282 SMART sant 25 75 IPR001005 -
Amo19g2717 282 SMART sant 78 126 IPR001005 -
Amo19g2717 282 CDD SANT 28 73 IPR001005 -
Amo19g2717 282 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 273 IPR044676 GO:0003700|GO:0006355|GO:0043565
Amo19g2717 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 128 IPR017930 -
Amo19g2717 282 Gene3D - 83 128 - -
Amo19g2717 282 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Amo19g2717 282 CDD SANT 83 124 IPR001005 -
Amo19g2717 282 Coils Coil 144 174 - -
Amo19g2717 282 ProSiteProfiles Myb-like domain profile. 25 73 IPR001005 -
Amo19g2717 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 77 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2717 Amo-Chr19 128916501 128917804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2717 14 282 MYB Transcription Factor Family AT4G13480 54.643 1.98e-89 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo19g2717 Myb_DNA-binding 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2717 K09422 - gmx:100782089 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2717 19 128916501 128917804 Amo19g2717 19 128916501 128917804 ECH