Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2714 ATGTATTGGGGAGGGAACATGGGAATGGGATGGGGTGTTATGATAGAAGAGGAAGTTGGAGGAGGAGGATGGAGGAAGGGTCCTTGGACTGCTGAGGAAGATAGATTGCTCATTGAATATGTCAAGATTCATGGCGAAGGTCGATGGAACTCTGTTGCTAGGCTTGCAGAGGAATGGAAAGAGTTGCAGGCTGAGATGGGTGAATTACCTGAGACCAGACCTCAAGAGGGGTGGTCGACAATTGCGAGAAGCTTGCCGGGAAGAACGGACAACGAGATCAAGAACTATTGGAGAACTCATTTCAAGAAAAAGGTTAAGAATCCATCTGACGCCGCCGAGAAGGCGAAAAACCGCCTCTTAAGGCGGCAGCAATTTCAGCAGCAGCAACAATTGAAGCAGCAGCAGCAGCAAATTCAACAACAGCAACAACAAGTTCAATTCAACTTGGACATGAAGGGGATCATGATGATGAACTTGCTTGAGATGGAAAATCATAATAATGACCATAGAAGAGTCCCTTCAATTTCTCATCAACAAGAGCCACAAGACATGTACCAACAACAAAGCTCAACAGAAGAAGAGCATGGATACTTCTACCACCCCATGTTCATCAATAACATTAATGGCAATAATAATGATAACTACTCACCAGCTGCAACAGAATCATCAAGTGAGGAAATCTTGTGGGATGGACTTTGGAACTTGGATGATGTTCTTGGCAATTTCACTGCAGCCAGTGCTACGAGCAAGCCAACAACTTTAGTTGCTCCATTTTGCTAA 780 0.4462 MYWGGNMGMGWGVMIEEEVGGGGWRKGPWTAEEDRLLIEYVKIHGEGRWNSVARLAEEWKELQAEMGELPETRPQEGWSTIARSLPGRTDNEIKNYWRTHFKKKVKNPSDAAEKAKNRLLRRQQFQQQQQLKQQQQQIQQQQQQVQFNLDMKGIMMMNLLEMENHNNDHRRVPSISHQQEPQDMYQQQSSTEEEHGYFYHPMFINNINGNNNDNYSPAATESSSEEILWDGLWNLDDVLGNFTAASATSKPTTLVAPFC* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2714 259 PANTHER MYB TRANSCRIPTION FACTOR 1 56 - -
Amo19g2714 259 Gene3D - 26 59 - -
Amo19g2714 259 Gene3D - 60 107 - -
Amo19g2714 259 Pfam Myb-like DNA-binding domain 73 100 IPR001005 -
Amo19g2714 259 Pfam Myb-like DNA-binding domain 26 55 IPR001005 -
Amo19g2714 259 SUPERFAMILY Homeodomain-like 24 97 IPR009057 -
Amo19g2714 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 105 IPR017930 -
Amo19g2714 259 SMART sant 25 103 IPR001005 -
Amo19g2714 259 CDD SANT 28 101 IPR001005 -
Amo19g2714 259 ProSiteProfiles Myb-like domain profile. 25 101 IPR001005 -
Amo19g2714 259 PANTHER MYB TRANSCRIPTION FACTOR 76 250 - -
Amo19g2714 259 Coils Coil 121 151 - -
Amo19g2714 259 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 76 250 IPR044676 GO:0003700|GO:0006355|GO:0043565
Amo19g2714 259 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 56 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2714 Amo-Chr19 128843570 128844796 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2714 14 259 MYB Transcription Factor Family AT4G13480 40.714 2.85e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo19g2714 Myb_DNA-binding 4.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2714 K09422 - gmx:100782089 237.269