Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2688 ATGGCTACCTCTATGCTCTCACCACCGAACCTTCTTTCCCTCGCAGCCCCATCACCAAGTTCCTCGTCCCCAACCTTATACTTTAAACCCGCCACCCGTCTCTCGCAGCCATTTTCTCTTTTTGTCGGAACTCCCAAACGCAATCGGAGACCCTTTGCGGTGGCCGCAGAAGAAGCCGCGGTCACTACATCGGTGGACCCTAAATCGGAGGCTGCAAGGAGGCTCTATGTTGGCAACATTCCTCGCACTGTCACCAACGATGAGCTCAAGAACATCGTTGAAGAGCATGGCGCCGTTGAGAAAGCTGAGGTTATGTATGATAAATACTCTGGACGGAGTCGTCGCTTTGCATTTGTTACGATGAAAACTGTTGAGGATGCAAATGCAGTTGTTGAGAAACTTAATGGCACTGAAATCGGAGGACGTGAGGTCAAGGTAAATATAACCGAAAAACCTTTATCAACAGTAGATACATCTTTCCTTCAGGCCGAGGAGTCCAACTTTGTTGACAGCCCCCACAAGGTATATGTGGGAAATCTGGCCAAGACAGTAACATCAGATACGCTTAAAACTTTTTTCTCTGAGAAGGGAAAAGTTCTTAGCGCCAAGGTCTCACGGGTTCCGGGGACCTCAAAATCGAGTGGCTATGGTTTTGTTAGTTTTTCTTCTGATGAGGATGTTGAAGCAGCAATCTTGTCTTTCAACAATGCCTCACTAGAAGGGCAAAAAATTCGTGTGAATAAGGCTTAG 750 0.472 MATSMLSPPNLLSLAAPSPSSSSPTLYFKPATRLSQPFSLFVGTPKRNRRPFAVAAEEAAVTTSVDPKSEAARRLYVGNIPRTVTNDELKNIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAVVEKLNGTEIGGREVKVNITEKPLSTVDTSFLQAEESNFVDSPHKVYVGNLAKTVTSDTLKTFFSEKGKVLSAKVSRVPGTSKSSGYGFVSFSSDEDVEAAILSFNNASLEGQKIRVNKA* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2688 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 145 IPR000504 GO:0003723
Amo19g2688 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 175 245 IPR000504 GO:0003723
Amo19g2688 249 Gene3D - 156 249 IPR012677 -
Amo19g2688 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 151 IPR000504 GO:0003723
Amo19g2688 249 SMART rrm1_1 74 147 IPR000504 GO:0003723
Amo19g2688 249 SMART rrm1_1 174 247 IPR000504 GO:0003723
Amo19g2688 249 Gene3D - 42 155 IPR012677 -
Amo19g2688 249 CDD RRM_HP0827_like 74 151 - -
Amo19g2688 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 173 249 IPR000504 GO:0003723
Amo19g2688 249 SUPERFAMILY RNA-binding domain, RBD 67 151 IPR035979 GO:0003676
Amo19g2688 249 SUPERFAMILY RNA-binding domain, RBD 169 249 IPR035979 GO:0003676
Amo19g2688 249 PANTHER OS02G0815200 PROTEIN 36 249 - -
Amo19g2688 249 MobiDBLite consensus disorder prediction 1 23 - -
Amo19g2688 249 PANTHER 30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC 36 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2688 Amo-Chr19 127834946 127837756 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2688 75 249 Eukaryotic Initiation Factors Gene Family AT2G23350 32.022 2.25e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2688 K13126 - sind:105168752 334.339