Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2665 ATGAAACAACATTTCCAGAGCCTTAAGATTGCTTCTGGTGTTGAACTTGAACAGAATGCTTTGGTTGAAACTATTGAAGCAACAATTGAAGGAGTTCATCTGAGGTTTGAATCTATTCCAGTTAGACAGGACGCTTCACCAAATGTGAGGGAGGAATTGGCACAAGATCCATCGTTGCAGAAAATAATGATGGAGGGAGTATTGAGCAAGTCTTGCAGGCTTCGATGGTGTAACCAGCTCTCCACACTCGTAGAGCATCGGGCCTTCACCCTCGAAGAGGACGACACCATAATCAGAGCTCACGCTCGGTTCGGCAACAAGTGGGCCACCATAGCCCCACTCCTTTCTGCCAGAACCGACAATGCCATTAAGAACCGCTGGAACTCCACCCTCAAACGCAAGTGCGCCTCCATGGGCCCCATCGACGATCCTCACTTCGCGCAGCCACTCAAACGCTTCGTCAGAACCAGCGTCGCCGTACCCGTGTCAACGGTGGTGGTGAGATACTCGTTGCTGACGGTGATGGCGAAGACGGAGGAGGAGGGACAAATGGATTATGAGTCAACTCGAAGAGATTTTGCAGGTAAGAGAGAGTGTGGGGGCAAGGAATCTGAAGAAGGTTCTGTTGTTGTTGATGATGAAGGAAAGCGAGAAAAAGAGAAAGAGGAAGGAGTTGGCATAGTTGACGGATTATGGCGGCGGCGACGAGCTCAGAAAATGGAAGGAGAGAGAGAGGATGGGTTATTTGCCCCCACTACAATGAAGCGCATCTGCAGGCAGCATGGGATATCCCATTGGCCATCTCGAAAGATCAACAAAGTTAACCTTTCCCTGTCCAAGCTCAAGCGTATTATTGAATCAGTCCAAGGTGTCGAAGGAGCATTCGCTTTGAATCCTCTGAGCACAAAGCAAAGTGTCTCGAGAAAATGGTTAATGATAAAGGAGGTAGGGAAGGAAACAAAGGGGCCTAGAGCAAAGAGTTGCTCTAGTGCAGATAGCACAAATCCAACTTCTCATGGTAGCCCTCCTATCGAAAGCTCGCCCGTAAAAGATATATTCATTACATCAAACAATGATCAATGTGTTGGTCTAAGGTCACCAGAGGCAACAATGCAGCTGCCGAATAATACACTGAGTTACCCAACGACTTGTGCTATTCCTGATATGGTGGCAACAAAACTTCAAGAGCCATTCGGAGGAATGCTAGTAAAAGATGCCGGAAGTTCTAAAGAATTCTGTAGCTGA 1245 0.4771 MKQHFQSLKIASGVELEQNALVETIEATIEGVHLRFESIPVRQDASPNVREELAQDPSLQKIMMEGVLSKSCRLRWCNQLSTLVEHRAFTLEEDDTIIRAHARFGNKWATIAPLLSARTDNAIKNRWNSTLKRKCASMGPIDDPHFAQPLKRFVRTSVAVPVSTVVVRYSLLTVMAKTEEEGQMDYESTRRDFAGKRECGGKESEEGSVVVDDEGKREKEKEEGVGIVDGLWRRRRAQKMEGEREDGLFAPTTMKRICRQHGISHWPSRKINKVNLSLSKLKRIIESVQGVEGAFALNPLSTKQSVSRKWLMIKEVGKETKGPRAKSCSSADSTNPTSHGSPPIESSPVKDIFITSNNDQCVGLRSPEATMQLPNNTLSYPTTCAIPDMVATKLQEPFGGMLVKDAGSSKEFCS* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2665 414 MobiDBLite consensus disorder prediction 321 349 - -
Amo19g2665 414 Gene3D - 87 145 - -
Amo19g2665 414 SUPERFAMILY Homeodomain-like 64 135 IPR009057 -
Amo19g2665 414 ProSiteProfiles RWP-RK domain profile. 207 294 IPR003035 -
Amo19g2665 414 CDD SANT 88 131 IPR001005 -
Amo19g2665 414 ProSiteProfiles Myb-like domain profile. 89 131 IPR001005 -
Amo19g2665 414 PANTHER PROTEIN NLP8 1 64 IPR045012 GO:0003700
Amo19g2665 414 Pfam Myb-like DNA-binding domain 88 130 IPR001005 -
Amo19g2665 414 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 306 412 - -
Amo19g2665 414 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 1 64 - -
Amo19g2665 414 Pfam RWP-RK domain 249 274 IPR003035 -
Amo19g2665 414 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 135 IPR017930 -
Amo19g2665 414 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 250 303 - -
Amo19g2665 414 MobiDBLite consensus disorder prediction 326 349 - -
Amo19g2665 414 PANTHER PROTEIN NLP8 250 303 IPR045012 GO:0003700
Amo19g2665 414 PANTHER PROTEIN NLP8 306 412 IPR045012 GO:0003700
Amo19g2665 414 MobiDBLite consensus disorder prediction 196 222 - -
Amo19g2665 414 SMART sant 85 133 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2665 Amo-Chr19 127122387 127124835 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2665 49 139 MYB Transcription Factor Family AT4G37260 67.033 6.53e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo19g2665 Myb_DNA-binding 8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2665 K09422 - aip:107618129 261.151