Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2649 ATGGGGAACAATAGCATGTTTCGTTATGCKGATGGTGTGGACAAGTTMTTAATGTTGTTTGGGACCATSGGAAGCATTGGTGATGGATTGCAGAACCCTCTTATGATGTATATTCTTAGTGATGTRATCAATGCTTATGGAGACAAGAATACCAAATTGGGTATGCATGATGTGAACAAGTATGCATTGAGGCTTTTATTAGTTGCAATTGGTGTTGGACTTTCAGCTTTTGTAGAAGGAATGTGTTGGGCAAGAACTGCAGAGAGACAGGCTTCAAGAATGAGAATGGAATATTTGAAATCAGTGCTGAGACAAGAAATTGGATTCTTTGATAGCCAGACAGCTGGTACGTCAACAACTTACCAAGTTGTCTCACTCATCTCCTCAGATGCCAATACCATCCAAGTTGCCTTGTGTGAGAAGATACCAGACTGCTTGACATACATGTCAACATTCTTTTTCTGCCACATCTTTGCATTTGTGCTTTCATGGAGACTCACACTTGCAGCCATACCACTCTCCCTCATGTTCATAGTCCCAGCTCTCATGTTTGGGAAGATGATGTTGGATGTGACAATGAAAATGATTGAGTCTTATGGTGTTGCTGGTGGGATTGCAGAGCAAGCAATATCTTCAATAAGAACTGTTTATTCCTATGTTGGGGARAACCAAACTCTKAACAAATTCAGCWGTGCMCTTCAGAAAACCATGGAGTTAGGAATAAAGCAAGGTTTTGCAAAAGGGTTGATGTTAGGGAGCATGGGAGTTATTTATATAAGTTGGGGTTTTCAGGCTTGGGTTGGAACCATTCTTATCACTGAAAAAGGAGAAAAGGGTGGTCATGTTTTTGTGGCTGGCTTCAATGTACTCATGGGAGGGCTGAGCATTTTAAGTGCACTTCCAAATTTAACTGCCATAACAGAAGCAACTACTGCCGTCACTCGCCTTTTCGAAATGATTGATAGGGTACCATCCATAGATTCTGAAGACAAAAAGGGGAAGGCCTTGTCATATGTTAGAGGAGAAATTGAATTCAGGAACATATACTTCAATTATCCATCAAGACCAGACACACCAATCTTACAAGGACTCAATCTCACTTTTCCAGCAGGCAAGAGAGTAGGCCTTGTTGGTGGTAGTGGTTCTGGAAAATCAACAATCATTGCACTTCTTGAGAGGTTCTATGACCCTATTGAGGGAGAAATACTATTGGATGGTCACAAGATTAGTAGACTTCAGTTGAAATGGTTTAGATCCCAATTTGGCCTRGTGAATCAAGAGCCTGTTCTTTTTGCTACATCAATTAAAGAGAATATATTGTTTGGAAAAGAAGGGGCTTCAATGGAAAATGTGATAAGTGCAGCTAAGTCAGCAAATGCACATGATTTCGTTGTTCAGTTGCCAGATGGTTATGAAACTCAAGTTGGACAGTTTGGATTTCAATTATCCGGCGGACAGAAGCAGCGAATCGCCATAGCAAGAGCATTACTTAGAGATCCAAAGATTCTCCTGCTTGATGAAGCAACCAGTGCTCTGGATGCACAATCCGAAAGGGTAGTACAGGCTGCGATAGATCAAGTTTCAAAAGGAAGGACAACAATCATCATCGCACACCGTTTATCTACGATACAAACGGCCGACCTCATTGCTGTCCTTCAAGAAGGCAGAGTGATTGAATTAGGCACCCATAATGAGCTGATGGACTTGAATGACGGACAAGGTGGAGCCTACGCCCGAATGGTAGAGTTGCAGCAAGTAACAGCTCAGAATGATGAACCAAGGCCTAGTTCCAATGCTCCCAAGGAGCGAAGGAGCACACAAAGGATCAGCACTCCTCAAAGCCCTTCAGTGAGTTTCACATCAAGCACACATGGCACTCCAATGTTCACTCCCTTCAGTCAGGGACTTTCCATGGGAACTCCTTACTCCTACACAGTTCAATATGATCTGGATGATGATAGTTTCGAAGATAACCCGAAACGATTGCATCATCCGGCTCCGTCACAGTGGCAATTGCTAAAGTTAAATGCTCCTGAGTGGGGTAGAGCATTGCTTGGACTCTTGGGAGCGTTGGGCTCTGGAGCAGTTCAACCAATAAATGCATACTGTGTTGGATTGCTAATATCTATCTACTTTGACACTGATAACATGAARTCCAAGACTCGACGCCTGGCCCTGGTTTTCTTAGGAATTGGTGTCTTTAACTTCTTCACAAGCATCCTCCAACACTACAATTTCGCAGTCATGGGCGAAAGGTTGACTCGAAGAATCCGCGAGAAGCTTCTAGAAAAACTGATGACATTTGAGATAGGATGGTATGACCAGGAAGAGAACACCAGTGCGGCGATCTGCGCAAGACTATCTTCCGAAGCCAACTTGGTTCGATCGCTGGTAGGCGATCGGATGTCATTGTTATCACAGGCATTATTTGGTTCTCTGTTTGCGTATGCTCTAGGACTCGTGCTGACGTGGAAGCTGTCCCTTGTGATGATTGCAGTGCAGCCAATTGTCATCGGAAGCTTCTATGCAAGGAGTGTTTTAATGAAAAGMATGGCTGAAAAGGCRCGAAAGTCACAACGAGAAGGAAGCCAGCTGGCAAGTGAGGCAGTTATAAACCACAGAACAATAACCGCCTTCAGTTCTCAGAAGAGAATGATGTCACTCTTCCAATCCACTATGTTAGGCCCTAAGCAAGAGAGCATTAGGCATTCTTGGATTTCGGGTTTCGGCCTTTTCAGCTCCCAATTCTTCAACACTGCTTCCACAGCTTTAGCATACTGGTATGGTGGGAGGCTCCTTGTGAATGGTGACATTACTCCCAAGCATCTGTTCCAAGCCTTCTTGATATTGCTCTTCACTGCTTACATCATTGCAGAGGCTGGAAGCATGACAAATGACATATCTAAAGGAAACAGTGCAGTCGGATCGGTTTTCGCCATCTTGGACCGGAAAAGCGAGATTGATCCTGAGACATCATGGGGGTCAGATAAAAGAAGGAAGATTAGGGGTAAAGTTGAGCTTAAGAGTGTGTTCTTTGCATATCCAACTAGGCCTGATCAAATGATATTTAAGGGTTTGTGTCTCACAGTTGAAGCTGGGAGAACAGTGGCACTAGTAGGGCATAGTGGGAGTGGCAAATCCACCATTATTGGTCTTGTTGAGAGATTTTATGATCCTTTGAAGGGAAGTGTGTGTATAGATGAACAAGATATTGTGTCATATAATTTGAGAATGCTGAGGTCACATATTGCATTGGTGAGTCAAGAGCCAACACTTTTTGCTGGAACCATTAGAGAAAATATTGCTTATGGAAAAGAAGAGGCTACTGAATCTGAGATAAGAAGGGCTGCAGCTATGGCTAATGCTCATGAATTCATAAGTGGAATGAAAGATGGGTATGAGACATATTGTGGAGAAAGAGGGGTTCAACTCTCAGGAGGGCAGAAACAAAGAGTAGCATTAGCAAGGGCCATACTAAAGAATCCAGCAATATTGCTTCTTGATGAGGCTACAAGTGCATTGGACAGTGTGTCAGAGAATTTGGTCCAAGAAGCACTTGAGAAGATGATGGTTGGACGAACATGCATTGTTGTGGCACATAGGCTATCTACAATACAAAGATCCAACTCCATTGCTGTCATTAAGGGTGGCAAGGTTGTGGAACAAGGTTCACATAATGAGTTAATTTCCCTTCATGGGGCATACTATTCTCTTATTAAACATCAAAATGCTAACTCCTCTCGATAA 3747 0.4297 MGNNSMFRYADGVDKXLMLFGTXGSIGDGLQNPLMMYILSDVINAYGDKNTKLGMHDVNKYALRLLLVAIGVGLSAFVEGMCWARTAERQASRMRMEYLKSVLRQEIGFFDSQTAGTSTTYQVVSLISSDANTIQVALCEKIPDCLTYMSTFFFCHIFAFVLSWRLTLAAIPLSLMFIVPALMFGKMMLDVTMKMIESYGVAGGIAEQAISSIRTVYSYVGENQTLNKFSXALQKTMELGIKQGFAKGLMLGSMGVIYISWGFQAWVGTILITEKGEKGGHVFVAGFNVLMGGLSILSALPNLTAITEATTAVTRLFEMIDRVPSIDSEDKKGKALSYVRGEIEFRNIYFNYPSRPDTPILQGLNLTFPAGKRVGLVGGSGSGKSTIIALLERFYDPIEGEILLDGHKISRLQLKWFRSQFGLVNQEPVLFATSIKENILFGKEGASMENVISAAKSANAHDFVVQLPDGYETQVGQFGFQLSGGQKQRIAIARALLRDPKILLLDEATSALDAQSERVVQAAIDQVSKGRTTIIIAHRLSTIQTADLIAVLQEGRVIELGTHNELMDLNDGQGGAYARMVELQQVTAQNDEPRPSSNAPKERRSTQRISTPQSPSVSFTSSTHGTPMFTPFSQGLSMGTPYSYTVQYDLDDDSFEDNPKRLHHPAPSQWQLLKLNAPEWGRALLGLLGALGSGAVQPINAYCVGLLISIYFDTDNMKSKTRRLALVFLGIGVFNFFTSILQHYNFAVMGERLTRRIREKLLEKLMTFEIGWYDQEENTSAAICARLSSEANLVRSLVGDRMSLLSQALFGSLFAYALGLVLTWKLSLVMIAVQPIVIGSFYARSVLMKXMAEKARKSQREGSQLASEAVINHRTITAFSSQKRMMSLFQSTMLGPKQESIRHSWISGFGLFSSQFFNTASTALAYWYGGRLLVNGDITPKHLFQAFLILLFTAYIIAEAGSMTNDISKGNSAVGSVFAILDRKSEIDPETSWGSDKRRKIRGKVELKSVFFAYPTRPDQMIFKGLCLTVEAGRTVALVGHSGSGKSTIIGLVERFYDPLKGSVCIDEQDIVSYNLRMLRSHIALVSQEPTLFAGTIRENIAYGKEEATESEIRRAAAMANAHEFISGMKDGYETYCGERGVQLSGGQKQRVALARAILKNPAILLLDEATSALDSVSENLVQEALEKMMVGRTCIVVAHRLSTIQRSNSIAVIKGGKVVEQGSHNELISLHGAYYSLIKHQNANSSR* 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2649 1248 ProSitePatterns ABC transporters family signature. 1144 1158 IPR017871 GO:0005524
Amo19g2649 1248 Gene3D - 995 1248 IPR027417 -
Amo19g2649 1248 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 10 1243 IPR039421 -
Amo19g2649 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 584 IPR027417 -
Amo19g2649 1248 SMART AAA_5 1032 1224 IPR003593 -
Amo19g2649 1248 SMART AAA_5 370 562 IPR003593 -
Amo19g2649 1248 Pfam ABC transporter 361 510 IPR003439 GO:0005524
Amo19g2649 1248 MobiDBLite consensus disorder prediction 581 632 - -
Amo19g2649 1248 CDD ABC_MTABC3_MDL1_MDL2 343 584 - -
Amo19g2649 1248 ProSitePatterns ABC transporters family signature. 482 496 IPR017871 GO:0005524
Amo19g2649 1248 Gene3D - 341 597 IPR027417 -
Amo19g2649 1248 Pfam ABC transporter 1024 1172 IPR003439 GO:0005524
Amo19g2649 1248 Pfam ABC transporter transmembrane region 685 954 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g2649 1248 Pfam ABC transporter transmembrane region 19 293 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g2649 1248 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 19 308 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g2649 1248 CDD ABC_6TM_Pgp_ABCB1_D1_like 18 316 - -
Amo19g2649 1248 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 10 1243 - -
Amo19g2649 1248 SUPERFAMILY ABC transporter transmembrane region 672 988 IPR036640 GO:0005524|GO:0016021
Amo19g2649 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1000 1242 IPR027417 -
Amo19g2649 1248 MobiDBLite consensus disorder prediction 602 632 - -
Amo19g2649 1248 CDD ABC_MTABC3_MDL1_MDL2 1005 1242 - -
Amo19g2649 1248 Gene3D ABC transporter type 1, transmembrane domain 68 978 IPR036640 GO:0005524|GO:0016021
Amo19g2649 1248 SUPERFAMILY ABC transporter transmembrane region 7 327 IPR036640 GO:0005524|GO:0016021
Amo19g2649 1248 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 684 969 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g2649 1248 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1005 1241 IPR003439 GO:0005524
Amo19g2649 1248 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 343 579 IPR003439 GO:0005524
Amo19g2649 1248 CDD ABC_6TM_Pgp_ABCB1_D2_like 696 987 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2649 Amo-Chr19 126503714 126511260 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2649 4 587 Calmodulin-binding Proteins AT2G36910 35.833 8.49e-101 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2649 K05658 - gmx:100788127 2112.04