Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2569 ATGAAGGGTGGATTAGAGGGACACGTCATCGATCCGCGGCATCCCCCAATAAGCGAAATGCAAAGCGCGGGGAGGAAGAGAGTGGACGCCGTTGATTCTCGATCTGCATCGGTTCTTGTTCGCGCCAAGGATGGTAGCGCTTTCGCCAAATGCGATGAGTGCAAGAAGGATGTTCCTGTTGCACTCATCAGCATGCATAGTTGCAGCCTCGAAGCCAAAATCAAAATGAATCTCGAGGCACAAGTTGTGGAACAGGCTTCTGAAGCTAAGAAACCAGAGAGGAAGAAGCCAAAATCTAATGAACCAAAGGCTAAAAGAGCCAAAGTTGAGAAGACGAAGAAGGTGAAAGATCCAAATGCGCCAAAGCGTCCTCCCACAGCTTTCTTTCTCTTCATGGATGATTTTAGAAAATCTTTTAAGGAGGCAAATCCTGATTCAAAGGATGTTAAGAGGGTTAGCAAAGAGGCTGGTGAGAAATGGAGGTCCATGACTGATGAAGAGAAGAAGCCTTATTCCGATAAAGTTGTTGAGCTTAAAGCAGAATACGAGAAGGCTATGAAAAACGCTGCTGGCGAAGACGAAGAGTTGACTGATGAAGAGGTCGATGAGAGGGACACGTCATCCATCCGCGGCATCCCACAATGGGCGAAATGCAAAGCGCGGTTTTTGGCGCTAAAAAGCCAAAAAAATTTCGCCATGAAACCACGAACCAGTGAAAGTGAAGAAGAAAGTGGAAAATTGGGAGAGGGAAGCAGCACATCGCAGGGGCAGAGAGTCGACGCAGTTGAATCTCGATCCTCGTCGGTTATTGTTCGCGGCAGGGATGGCAGCGCTTTCGTCAAATGCCAAGACTGCAAAGAGGACGTTCCTGTTGGACTTGTCAGCATGCATGGTTGCAGCGACGAAGCCAAAACTAAAATGAATCTCGCTAAGAGACCAGTGAGGAAGAATCCAAGATTTATTGTACCAAAGGCTAAAAGGGCCAAAGTTGAGAAGACGAAGAAGGTGAAAGATACAGACGTGCCAAAGAAGCCTCCATCATCCTTCTTTCTCTTCATGGATGATTTTAGGGAATCTTTTAAGGAGGCGAACCCTGATTCAAAGGATGATAACAGGGTTCGTAAAGAGGCTCGTGACAAATGGAGGTCCATGACTGATGAAGAGAAGAAGCCTTATTCTGATAAATTTGCTGAACTTAAAGTGGAATATGAGAAGGCTATGGAAATTTACAATGCTGCTAAAGCAGGAGAAGAGGGAGAAGGTGAAGGAGAGCATGAAGAGGGGGCTGATGAACAATCTGATAAAAAAGCAGCTGCTGCAGGTGAAGAGGAGGAGCTGACTGATGAGGATTAA 1353 0.4634 MKGGLEGHVIDPRHPPISEMQSAGRKRVDAVDSRSASVLVRAKDGSAFAKCDECKKDVPVALISMHSCSLEAKIKMNLEAQVVEQASEAKKPERKKPKSNEPKAKRAKVEKTKKVKDPNAPKRPPTAFFLFMDDFRKSFKEANPDSKDVKRVSKEAGEKWRSMTDEEKKPYSDKVVELKAEYEKAMKNAAGEDEELTDEEVDERDTSSIRGIPQWAKCKARFLALKSQKNFAMKPRTSESEEESGKLGEGSSTSQGQRVDAVESRSSSVIVRGRDGSAFVKCQDCKEDVPVGLVSMHGCSDEAKTKMNLAKRPVRKNPRFIVPKAKRAKVEKTKKVKDTDVPKKPPSSFFLFMDDFRESFKEANPDSKDDNRVRKEARDKWRSMTDEEKKPYSDKFAELKVEYEKAMEIYNAAKAGEEGEGEGEHEEGADEQSDKKAAAAGEEEELTDED* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2569 450 Gene3D High mobility group box domain 106 188 IPR036910 -
Amo19g2569 450 MobiDBLite consensus disorder prediction 361 392 - -
Amo19g2569 450 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 22 206 - -
Amo19g2569 450 MobiDBLite consensus disorder prediction 84 125 - -
Amo19g2569 450 CDD HMGB-UBF_HMG-box 342 408 - -
Amo19g2569 450 Coils Coil 175 199 - -
Amo19g2569 450 MobiDBLite consensus disorder prediction 325 344 - -
Amo19g2569 450 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 22 206 - -
Amo19g2569 450 SUPERFAMILY HMG-box 333 413 IPR036910 -
Amo19g2569 450 MobiDBLite consensus disorder prediction 247 264 - -
Amo19g2569 450 Gene3D High mobility group box domain 326 422 IPR036910 -
Amo19g2569 450 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 253 433 - -
Amo19g2569 450 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 342 411 IPR009071 -
Amo19g2569 450 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 121 190 IPR009071 -
Amo19g2569 450 MobiDBLite consensus disorder prediction 230 268 - -
Amo19g2569 450 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 253 433 - -
Amo19g2569 450 MobiDBLite consensus disorder prediction 325 342 - -
Amo19g2569 450 SUPERFAMILY HMG-box 112 188 IPR036910 -
Amo19g2569 450 Pfam HMG (high mobility group) box 121 188 IPR009071 -
Amo19g2569 450 Pfam HMG (high mobility group) box 342 411 IPR009071 -
Amo19g2569 450 MobiDBLite consensus disorder prediction 187 208 - -
Amo19g2569 450 MobiDBLite consensus disorder prediction 141 171 - -
Amo19g2569 450 MobiDBLite consensus disorder prediction 412 450 - -
Amo19g2569 450 SMART hmgende2 341 412 IPR009071 -
Amo19g2569 450 SMART hmgende2 120 191 IPR009071 -
Amo19g2569 450 MobiDBLite consensus disorder prediction 86 120 - -
Amo19g2569 450 CDD HMGB-UBF_HMG-box 121 187 - -
Amo19g2569 450 MobiDBLite consensus disorder prediction 1 34 - -
Amo19g2569 450 MobiDBLite consensus disorder prediction 428 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2569 Amo-Chr19 122641063 122644561 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Amo19g2569 HMG_box 1.4e-17 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2569 K25507 - aip:107619373 327.791