Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2567 ATGAATGAAGATGGATCAAAGGGTAGGACAAAGGATGACGGCGGAGATATCCGATATAGAGGCGTACGCCGCCGTCCTTGGGGGAAGTTTGCGGCCGAGATTCGTGACTCCACTAGGCAGGGTCAGAGGGTTTGGCTTGGGACATTCAACACGGCTGAGGAAGCAGCTAGGGCTTATGATAGAGCCGCTTATGCCATGAGAGGTGCATTTGCTATCCTTAACTTCCCAAATGAGTATCCTATGTCATCAGGTTATGGTAATAACCGCACCGGTGGCGGTGGCAGTGGCTCCTCTTATTCCTCCGGCGCTTCAACTTCCTCTGCTTCATGGCAGGGCAATGTGGAAGGCAGGGGAAGGAGTGAAGTCTTTGAGTTTGAGTACTTGGATGACAAATTGTTGGAGGAGCTTCTTGCATGCGAAGAAAAGAAGAAAAATGGACCATGA 444 0.5045 MNEDGSKGRTKDDGGDIRYRGVRRRPWGKFAAEIRDSTRQGQRVWLGTFNTAEEAARAYDRAAYAMRGAFAILNFPNEYPMSSGYGNNRTGGGGSGSSYSSGASTSSASWQGNVEGRGRSEVFEFEYLDDKLLEELLACEEKKKNGP* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2567 147 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Amo19g2567 147 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Amo19g2567 147 MobiDBLite consensus disorder prediction 1 20 - -
Amo19g2567 147 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Amo19g2567 147 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Amo19g2567 147 PANTHER - 12 138 - -
Amo19g2567 147 PANTHER DNA-BINDING DOMAIN 12 138 IPR044808 GO:0003700|GO:0009873
Amo19g2567 147 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Amo19g2567 147 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Amo19g2567 147 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Amo19g2567 147 MobiDBLite consensus disorder prediction 81 114 - -
Amo19g2567 147 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2567 Amo-Chr19 122610322 122610808 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2567 13 144 AP2-EREBP Transcription Factor Family AT3G23230 60.150 8.85e-44 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo19g2567 AP2 5.6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2567 - - aip:107615822 217.624