Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2552 ATGGATTTCGATTCCCTCGACGATTTCTTCGATTTCGATGATTTTATCCATCATTCTCCCCATCCGCCTTCCGATTTCCTGTGGTCCAATCCAAGTGTGAGCTCTGAAATTGGCTTTTCAGCAGGTGGTGGTGGTGGTAGTGATGTCTGTCAAGAGAAAACCAGAAAGAGGAGACATGCTAGTTCATGTTGCAAGGCAGGGACAAAGGCTGGCCGTGAAAAGTTGCGAAGGGAGAGACTCAATGAAAGGTTCTGTGACTTAAGTGCTGTTTTGGAACCTGGGAGACCTGCGAAAGCTGATAAAATGGCTATACTTGATGATGCTATCAGAGTTTTGAAACAACTAAAAACTGAAGCTGAGGAACTCAAACAAACGAATGAAAAATTGTTAGAAGAAATAAAATGTTCTAAGGCCGAGAAAAATGAACTTCGAGAAGAGAAACTTGTTCTGAAAGCAGATAAAGAAAGGATTGAGAGACAGTTGAAAGATTTGCCTGTTCAACCTGCAGGGTATATGCCTCCCAATCTAGCTCCTTTCCAAGCAGGGGTCAACAAAGTCGCTGTTTATCCGAACTACGGTTATATGCCAATGTGGCATTATCTTCCTCCATCTACCCGTGATACATCCCATGATCATGAGCTTAGGCCTCCTGCTGCATAA 660 0.4333 MDFDSLDDFFDFDDFIHHSPHPPSDFLWSNPSVSSEIGFSAGGGGGSDVCQEKTRKRRHASSCCKAGTKAGREKLRRERLNERFCDLSAVLEPGRPAKADKMAILDDAIRVLKQLKTEAEELKQTNEKLLEEIKCSKAEKNELREEKLVLKADKERIERQLKDLPVQPAGYMPPNLAPFQAGVNKVAVYPNYGYMPMWHYLPPSTRDTSHDHELRPPAA* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2552 219 Gene3D - 68 148 IPR036638 GO:0046983
Amo19g2552 219 SMART finulus 70 121 IPR011598 GO:0046983
Amo19g2552 219 PANTHER TRANSCRIPTION FACTOR BHLH104 9 219 - -
Amo19g2552 219 Coils Coil 105 160 - -
Amo19g2552 219 PANTHER BHLH TRANSCRIPTION FACTOR 9 219 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Amo19g2552 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 140 IPR036638 GO:0046983
Amo19g2552 219 CDD bHLH_AtILR3_like 69 144 - -
Amo19g2552 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 115 IPR011598 GO:0046983
Amo19g2552 219 Pfam Helix-loop-helix DNA-binding domain 68 116 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2552 Amo-Chr19 122081767 122084389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2552 39 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 61.376 2.28e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo19g2552 HLH 3.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2552 - - aip:107617845 395.971