Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2547 ATGAACAATATTGGGACTTCTTCTACCATCTCATCAACCACTTTTGTCCATTGCATCAACAAGGGTTATTGTTGGACAAGAACAAGTGAGAGACAAGCAGCAAGAATGAGAGCAAAGTACCTGAAAGCAGTGATGAGACAAGAAGTTGCATATTTTGATTTGAATGTGACAAGTACCTCAGACATTATCACTGGCGTTTCCAATGATAGCCTCCTCATTCAGGATGTTATTAGTGAGAAGGTACCAAATTTGTTGATGAACTTTTCATTGTTCATTGGGAGCTACATAGCTGGTTTTGCAATGCTATGGAGATTGGCCATAGTAGGGATCCCATTCACAGTTCTTCTTGTAATCCCTGGCTTCATTTATGGCAAGACATTAATGGGATTAGCAAAGAAAATGAGAGAAGAGTATAATAAAGCAGGTGCAATAGCTGAACAAGCAATATGTTCAATAAGAACAGTGTATTCATATGTGGGAGAAAATAAGACCATAAATGCATTCTCTAATGCTCTTCAAGGGTCACTGAGTTTGGGAATCAAACAAGGATTGGTCATGGACCATGGTGCTAAAGGAGGCACAGTTTTTTCAGCTGGAGCAGCTATCACTGTTGGTGGATTGGCACTAGGTGCTGGTTTAACCAACATGAAATACCTGAGCGAAGCAAGTTCAGCAGCGGAACGCATAAGGGAAGTCAATGAGAGAGTTCCGATGATCGATTCCGACGACAGTGACGGCGAAATCCTGGGAAGCGTTCGAGGGGAAGTAGAATTCCGAAACGTAGAGTTCGCGTACCCGACGAGACCAGAGACCGTTATTTTGAAGGGTTTGTGGCTCAAGATTCCGGCAGGGAAGACGGTGGCATTGGTGGGAGAGAGCGGTTCTGGAAAATCCACCATCATTGCGCTTTTGCAGCGGTTTTACGACCCTCTTGGTGGCGAAATAAGGTTTGATGGTGTTGCCATTGATAAGTTGCAGCTCAAGTGGTTCAGATCACAGATGGGGTTAGTGAGTCAAGAGCCCGTATTATTTGCCACCAGCATCAAAGAGAACATCCTGTTTGGGAAGGAGGATGCAACAGAGGCTGAGGTCATTGAGGCTGCAAAAGCTTCCAATGCTCATAATTTTATTTCCATGCTGCCTCAGGGTTATCAAACCCAGGTGGGTGAGAGAGGAACTCAAATGTCAGGTGGACAAAAGCAGAGGATTGCAATTGCTAGGGCCATAATTAAGAAGCCAAGAATGCTTCTTCTGGACGAAGCAACCAGTGCACTAGACTCCCACTCAGAGCGAATTGTCCAAAAAGCCCTCGAACAAGTGGCTGTTGGCTGCACCACCATCGTCGTCGCCCACCGCCTGTCCACGATTCGCAATGCCGACGTCATCGTTGCCATGCGAGCCGGAAAGGTGGTGGAGATGGGCACTCACGACGACCTCCTCTTGAATCATGATGGACTCTACTCCTCCATGGTTCGTCTCCAACAAACTGAGAATTCAGAAACAGATGAATCTGTAACTGCCCCAACAACTACTATTCATGTTCCTTCTTCTATGTCGGCTAGTGACACCGCTGATATTCACCACCTATGTTTAATTCATACAGATGATGATGACAACATTGAAAAGGTGGAAGAAGAGAAAGAGGAGAATAAGAACGCTCAGGCGACGGCATCGTTCTGGAGGCTGCTGGCACTGAACCTTCCGGAGTGGAAGCAAGCAGTTATGGGTTGCTTGAATGCGATGGTGTTCGGTGCAGTTCAACCGGTGTACACTTTGATTATGGGGTCGATGATGTTTGTGTATTTCGACAGCGATGATGAAGAGATGAGGAGGAAGACGAAGGAGTACTCGGTTTGCTTTGTGGGACTGTTTGTGTTGTCTTTGATTGTGAACATCGGGCAGCATTATAGCTTTGCATATATGGGAGAGTGCTTGACCAAAAGAATTAGAGAGACTATGTTTAAAAAGATACTCACCTTTGAAGTTTCCTGGTTTGATCTTTCTGAAAATTCTACCGGTGCTATTTGCTCTAGGCTTGCCAACGATGCAAATGTGAGGTCTTTAGTGGGAGATAGGATTGGTTTAGTGGTGCAGACAGCGTCAGCGGTAGTAACAGCTTGGACTTTGGGTTTGGTCATTGCATGGAGACTGGCTATTGTTATGATATGTGTTCAACCCCTTATGATTGCATGCTTCTATACAAAACGTGTCCTTATCAAGACTATGTCAAAAAAGGTTGCAAAGGCGCAAGAAGAAAGTAGCAAGGTTGCCGCTGAAGCCGTTTCAAACCTAAGAACTATCACAGCCTTCTCTTCTCAAAACCGAATCCTCAAAATGCTCGAAAATGCACAAGAAGGACCAAGACGCGAGAATATCCGGCAATCATTTTACGCCGGAATCGGCCTTGCATGTTCCCAAGGCATAACATCATGTGTTTGGGCTCTCAACTATTGGTACGGTGGCAAGCTCGTCGCCGACGGTTACATCACCACAAAGGCATTGTTTCAAAGCTTCATGATTATTGTGAGTACAGCAAGAGTCATTGCCGACGCCGGCAGCATGACCTCGGACCTCGCAAAAGGCGCTGACGCCGTGTGCTCCATTTTCGCCGTCTTAGACCGGACCACCAAGATAGCGGCCGACGACGAAAATGGTCACAACCCGGAACATGTAACAGGACAAATACAACTCCATGATGTGCATTTTGCTTACCCCACTAGGCCAAACGTGACTATCTTCAAATCCTTTTCAATGAAAATAGAAGCTGGAAAGTCAACGGCATTGATAGGTCAAAGTGGATCCGGAAAGTCAACGATTATAGGGCTAATTGCAAGGTTCTATGATCCGCTAAGAGGGTACGTGACAATTGATAATAGAGATGTAAAGTCCTATAATTTGAAACAATTAAGGAGGCACATTGCACTTGTGAGCCAAGAACCTACGTTGTTCAATGGGAGCATAAGAGAGAACATTGCTTATGGATCTAATAACGGTGATGATGATAATGAAGTTGATGAGTCAGAGATCATAGAAGCGTCAAAATTAGCCATGGCACATGATTTTATTACCGGATTGAAGGACGGTTATGACACATGGTGTGGTGAGAAGGGGTTACAGCTTTCAGGGGGTCAAAAGCAAAGGATAGCGATTGCAAGGGCTATATTGAAAAATCCAAGAGTGTTGTTATTGGATGAGGCAACTAGTGCCCTTGATATTCAATCGGAGAAAGTTGTTCAGGAAGCACTAGAGAGGGCTATGGTGGAGAGGACTAGCGTGATCGTCGCACATAGGATGTGTACCATAAAGAAATGTGATCTTATTGCTGTGTTGGAGAAGGGCATGGTTGTGGAAAGTGGGACCCACTCTTCTTTGTTGGCAAAAGGAACTGCTGGAGCTTATTGCAACTTTGTTAGGCTTCAGACTGGAACTAACTAG 3435 0.4512 MNNIGTSSTISSTTFVHCINKGYCWTRTSERQAARMRAKYLKAVMRQEVAYFDLNVTSTSDIITGVSNDSLLIQDVISEKVPNLLMNFSLFIGSYIAGFAMLWRLAIVGIPFTVLLVIPGFIYGKTLMGLAKKMREEYNKAGAIAEQAICSIRTVYSYVGENKTINAFSNALQGSLSLGIKQGLVMDHGAKGGTVFSAGAAITVGGLALGAGLTNMKYLSEASSAAERIREVNERVPMIDSDDSDGEILGSVRGEVEFRNVEFAYPTRPETVILKGLWLKIPAGKTVALVGESGSGKSTIIALLQRFYDPLGGEIRFDGVAIDKLQLKWFRSQMGLVSQEPVLFATSIKENILFGKEDATEAEVIEAAKASNAHNFISMLPQGYQTQVGERGTQMSGGQKQRIAIARAIIKKPRMLLLDEATSALDSHSERIVQKALEQVAVGCTTIVVAHRLSTIRNADVIVAMRAGKVVEMGTHDDLLLNHDGLYSSMVRLQQTENSETDESVTAPTTTIHVPSSMSASDTADIHHLCLIHTDDDDNIEKVEEEKEENKNAQATASFWRLLALNLPEWKQAVMGCLNAMVFGAVQPVYTLIMGSMMFVYFDSDDEEMRRKTKEYSVCFVGLFVLSLIVNIGQHYSFAYMGECLTKRIRETMFKKILTFEVSWFDLSENSTGAICSRLANDANVRSLVGDRIGLVVQTASAVVTAWTLGLVIAWRLAIVMICVQPLMIACFYTKRVLIKTMSKKVAKAQEESSKVAAEAVSNLRTITAFSSQNRILKMLENAQEGPRRENIRQSFYAGIGLACSQGITSCVWALNYWYGGKLVADGYITTKALFQSFMIIVSTARVIADAGSMTSDLAKGADAVCSIFAVLDRTTKIAADDENGHNPEHVTGQIQLHDVHFAYPTRPNVTIFKSFSMKIEAGKSTALIGQSGSGKSTIIGLIARFYDPLRGYVTIDNRDVKSYNLKQLRRHIALVSQEPTLFNGSIRENIAYGSNNGDDDNEVDESEIIEASKLAMAHDFITGLKDGYDTWCGEKGLQLSGGQKQRIAIARAILKNPRVLLLDEATSALDIQSEKVVQEALERAMVERTSVIVAHRMCTIKKCDLIAVLEKGMVVESGTHSSLLAKGTAGAYCNFVRLQTGTN* 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2547 1144 CDD ABC_MTABC3_MDL1_MDL2 895 1140 - -
Amo19g2547 1144 SMART AAA_5 283 477 IPR003593 -
Amo19g2547 1144 SMART AAA_5 922 1120 IPR003593 -
Amo19g2547 1144 Pfam ABC transporter 914 1068 IPR003439 GO:0005524
Amo19g2547 1144 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 184 1142 IPR039421 -
Amo19g2547 1144 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 10 184 IPR039421 -
Amo19g2547 1144 Gene3D ABC transporter type 1, transmembrane domain 8 184 IPR036640 GO:0005524|GO:0016021
Amo19g2547 1144 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 256 492 IPR003439 GO:0005524
Amo19g2547 1144 CDD ABC_6TM_Pgp_ABCB1_D1_like 23 229 - -
Amo19g2547 1144 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 23 185 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g2547 1144 Gene3D - 885 1143 IPR027417 -
Amo19g2547 1144 ProSitePatterns ABC transporters family signature. 395 409 IPR017871 GO:0005524
Amo19g2547 1144 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 494 IPR027417 -
Amo19g2547 1144 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 184 1142 - -
Amo19g2547 1144 ProSitePatterns ABC transporters family signature. 1040 1054 IPR017871 GO:0005524
Amo19g2547 1144 Pfam ABC transporter 274 423 IPR003439 GO:0005524
Amo19g2547 1144 CDD ABC_MTABC3_MDL1_MDL2 256 494 - -
Amo19g2547 1144 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 884 1140 IPR027417 -
Amo19g2547 1144 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 580 860 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g2547 1144 Gene3D ABC transporter type 1, transmembrane domain 185 864 IPR036640 GO:0005524|GO:0016021
Amo19g2547 1144 CDD ABC_6TM_Pgp_ABCB1_D2_like 563 878 - -
Amo19g2547 1144 SUPERFAMILY ABC transporter transmembrane region 21 240 IPR036640 GO:0005524|GO:0016021
Amo19g2547 1144 Gene3D - 246 495 IPR027417 -
Amo19g2547 1144 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 10 184 - -
Amo19g2547 1144 SUPERFAMILY ABC transporter transmembrane region 561 874 IPR036640 GO:0005524|GO:0016021
Amo19g2547 1144 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 895 1137 IPR003439 GO:0005524
Amo19g2547 1144 Pfam ABC transporter transmembrane region 15 210 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g2547 1144 Pfam ABC transporter transmembrane region 576 844 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2547 Amo-Chr19 121757377 121770345 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2547 10 500 Calmodulin-binding Proteins AT2G36910 38.772 7.92e-100 343