Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2515 ATGAGAGTTATTAGGAATTGGATTGTAAGTAAGAAGAGAAAGTTTCTTGGGATTGAGGAGAGATTGGAGAAGATGATCAATTGCATGCGTTCTGGGGAACAGGTTGCTGTTGATGAGATTGGTGGTTATTCATCAGAGTCACTTGCAACAAGGGACTATTCAGCTACAGCGAGTGGCTATTCATCTAGGCCTGGTGCTGCTGAATTTGATCCAAAGTTGGATAATAGCAACATTGAAGAAGCAGAGTCCACACTTCGTGAAAGTGGTTACTTGAACTATGAGGAAGCTAGAGCTTTACTAGGAAGGCTTGAATATCAGAAGGGTAATTTTGAAGCTGCACTTCATGTATTTGAAGGAATAGACATTGCTGCTGTTGCTCCAAAGATGAAAATTTCTATATCTAGAAGATGTGAACGGAATATGAATAGACGCCGTTCGTTGAGTGATGCAGCGCCTCCTATGTCCATTCATGCTGTTAGTCTACTTCTTGAAGCTGTTTTGCTCAAGGCAAAGTCATTGCAGATTCTTGGAAGGTTTCAAGAAGCTGCTAGATCATGCAAGACTATTTTGGACACTGTTGAATCTGCATTACCTGAAGGATGGCCTGAGAACTTTGATTTAGACAGAAAGTTACAAGAGACTATAAGAAATGCTGTAGAACTACTTCCAGAGCTATGGAACCTTGCCGGCTCTCATCAACATGTCATATCATCATTTAGGAGGGCCTTGCTTTATCCATGGAATCTTGACATTGAAACAACTTCAAGAATTCAAAAGGAATTTGCTATGTTTCTTCTGTATAGCGGCTGTGAAGCGAGTCCTCCTTCGCTTCGCTCTCAATTGGACGGTTCCTTTGTCCCAAGAAACAATATAGAAGAAGCTGTTCTCTTGCTTCTTATTCTGCTGAGAAATTCTGCTATAGGAAGCATTGAATGGGACCCTTCAGTAGTTGATCATCTTTCTTTTGCTCTAACTGTTTCCGGGGAGTTCAAGACACTGGCTCAACAGGTTGAGGAATTGCTTCCGGAAACCATGGAGAGGAAAGAAAGACATTATATTCTAGCACTTTGTTACTTTGGTGAAGGTGAGCACATGATTGCTTTGGATCTTTTGAGGAACTCTTTGAATGATAGAGAGAACTCGGAGTGCGAACAGGAACTGCTTCTAGCTTCAAAAATTTGTGCAGATAACATGGTTTGTGTTGAGGATGGAATCAAATATTCTTGCAAAGCAATTTCTCATTTGGATGGAAAGTGCATGCAAGTGGTAGCAATTGCATATTGCTTACTAGGTGTTCTGCTCTCATCGAAATCAAGGTTGATAGCTTCTGATTCAGAGAAAGTTTTAATGCAATCCGAAGCACTGAGGGCTCTGAAAACGGCAGAGAGAACGATGAGTGAGAGTGATCCTTACATAGTCCTTCATCTTTGTCTAGAATACGCCGAGCAGCGGAACTTGAGCATTGCTTTTTGTCATGCAAAGGAACTGGTTAAGCTTGAGGGTGGATCTAGTGTTGCTGCATATGTATTACTTGCAAGGATTTTATCAGCTCAAAAGAATTTTGTGGATGCAGAGTTGGTTATTGATGCTGCCATAGATCAAAGTGGGAAATGGGATCAAGGAGAGTTGTTGAGAACCAAAGCGAAACTCCGGATTGCACAGGGAAGATTAAGGAGTGCAGTGGAGACATATACTTTCCTCCTTGCTGTGCTTCAAGTCCAAAACAAAAGTTTGGGCACTGCAAATAAGGTTATGAAGAGTAAGAGAAACCGCAACAGAAATCTGGAGATGGAAATATGGCATGATTTGGCCAACTTGTACATTGCTTTATCACAGTGGCGAGATGCTGAAGTTTGTCTTGCAAAGTCTAAGGCTATTAATCCTTATTCTGCTTCTAGATGGCACTCCACAGGTTTACTTTTCAAGGCCAGAGATCAGCAGCAAGAAGCATTGAATGCATTTAGGAAAGCACTAGACATCGAACCAAACCATGTGCCAAGTTTGATATCAACAGCATGTGTTCTGAGACAGCTTGGTGGCCAATCATCTTCAATTGTGAGAAGCCTTCTGAGTGATGCACTAAGGCTTGACAGAACAAACCCAAATGCTTGGTACAATCTTGGACTGCTCTACAAACATGATTTGGGCACATCTACATTGGAAGCTGCTGAGTGCTTTGAGGCTGCTGCTCATCTTGAAGAAACTTCTCCCATTGAACCCTTTAGATAG 2229 0.4172 MRVIRNWIVSKKRKFLGIEERLEKMINCMRSGEQVAVDEIGGYSSESLATRDYSATASGYSSRPGAAEFDPKLDNSNIEEAESTLRESGYLNYEEARALLGRLEYQKGNFEAALHVFEGIDIAAVAPKMKISISRRCERNMNRRRSLSDAAPPMSIHAVSLLLEAVLLKAKSLQILGRFQEAARSCKTILDTVESALPEGWPENFDLDRKLQETIRNAVELLPELWNLAGSHQHVISSFRRALLYPWNLDIETTSRIQKEFAMFLLYSGCEASPPSLRSQLDGSFVPRNNIEEAVLLLLILLRNSAIGSIEWDPSVVDHLSFALTVSGEFKTLAQQVEELLPETMERKERHYILALCYFGEGEHMIALDLLRNSLNDRENSECEQELLLASKICADNMVCVEDGIKYSCKAISHLDGKCMQVVAIAYCLLGVLLSSKSRLIASDSEKVLMQSEALRALKTAERTMSESDPYIVLHLCLEYAEQRNLSIAFCHAKELVKLEGGSSVAAYVLLARILSAQKNFVDAELVIDAAIDQSGKWDQGELLRTKAKLRIAQGRLRSAVETYTFLLAVLQVQNKSLGTANKVMKSKRNRNRNLEMEIWHDLANLYIALSQWRDAEVCLAKSKAINPYSASRWHSTGLLFKARDQQQEALNAFRKALDIEPNHVPSLISTACVLRQLGGQSSSIVRSLLSDALRLDRTNPNAWYNLGLLYKHDLGTSTLEAAECFEAAAHLEETSPIEPFR* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2515 742 Gene3D Tetratricopeptide repeat domain 66 578 IPR011990 GO:0005515
Amo19g2515 742 PANTHER PROTEIN NPG1 17 742 IPR043376 -
Amo19g2515 742 PANTHER OS10G0471400 PROTEIN 17 742 - -
Amo19g2515 742 ProSiteProfiles TPR repeat profile. 631 664 IPR019734 GO:0005515
Amo19g2515 742 SUPERFAMILY TPR-like 542 712 IPR011990 GO:0005515
Amo19g2515 742 SUPERFAMILY TPR-like 349 569 IPR011990 GO:0005515
Amo19g2515 742 Gene3D Tetratricopeptide repeat domain 579 738 IPR011990 GO:0005515
Amo19g2515 742 SMART tpr_5 597 630 IPR019734 GO:0005515
Amo19g2515 742 SMART tpr_5 505 538 IPR019734 GO:0005515
Amo19g2515 742 SMART tpr_5 631 664 IPR019734 GO:0005515
Amo19g2515 742 SMART tpr_5 701 736 IPR019734 GO:0005515
Amo19g2515 742 SMART tpr_5 163 196 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2515 Amo-Chr19 120359563 120363910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2515 26 742 Calmodulin-binding Proteins AT4G28600 52.198 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2515 K21843 - gmx:100789469 1114.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2515 19 120359563 120363910 Amo19g2515 19 120359563 120363910 ECH