Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2433 ATGGCAACTATGTTGGCAAAGGAGCATGGCTTGAATCTGAAGGAGACTGAGCTTTGCCTTGGCCTGCCCGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGACACGGCAACGGCAGAAACTCCGAGAGCCACCGGGAAGAGAGGGTTCTCTGAGACGGTTGATCTGAAGCTTAACCTTCAAGGCAATGATACTAACAAGGAAGATCTGAATGAGAATCTGAAGAATGTTCCAAAGGAGAAGACTCTCCTTAAGGACCCTGCCAAGCCACCCGCTAAGGCTCAAGTAGTTGGATGGCCACCAGTGAGGTCATACAGAAAGAACATGATGGCACAAAAAGTGAGCACTGAGGAAAATAACAATGGCAGCGCCACCACTGAGAAGACAACAAGCAGCGCCGCCGCTGCAGCCACCACCGCAGCTTCTACTGGTGGTTCATTTGTGAAGGTCTCCATGGATGGAGCTCCTTACCTTCGCAAGGTCGACCTGACAATGTACAAAAGCTACCAAGACTTATCTGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATGGGTAACTATGGGTCCCAAGGAATGATTGATTTCATGAATGAGAGCAAGTTGATGGATCTTCTGAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGGATCATGCAAGCGTCTGCGAATAATGAAAGGATCAGAAGCTATTGGGCTTGCGCCGAGGGCCATGGAGAAATGCAAAAGCAGAAGCTGA 789 0.5057 MATMLAKEHGLNLKETELCLGLPGGGGGGGGGGDTATAETPRATGKRGFSETVDLKLNLQGNDTNKEDLNENLKNVPKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAQKVSTEENNNGSATTEKTTSSAAAAATTAASTGGSFVKVSMDGAPYLRKVDLTMYKSYQDLSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAMEKCKSRS* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2433 262 Pfam AUX/IAA family 16 253 IPR033389 -
Amo19g2433 262 SUPERFAMILY CAD & PB1 domains 141 243 - -
Amo19g2433 262 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 255 IPR003311 GO:0005634|GO:0006355
Amo19g2433 262 MobiDBLite consensus disorder prediction 20 49 - -
Amo19g2433 262 PANTHER AUXIN-RESPONSIVE PROTEIN IAA7 7 255 - -
Amo19g2433 262 Gene3D - 139 256 - -
Amo19g2433 262 ProSiteProfiles PB1 domain profile. 144 244 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2433 Amo-Chr19 113962850 113965893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2433 121 247 B3 DNA Binding Superfamily AT3G61830 29.921 1.24e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo19g2433 AUX_IAA 1.2e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2433 K14484 - gmx:100810762 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2433 19 113962850 113965893 Amo19g2433 19 113962850 113965893 ECH