Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2426 ATGAATGATTTTGCTGTGAGGAAGAATAAGATTCAACGGAATGTGAAGAATGAGGTTACACAACAAGAATTTGTATGTTTTCGGCAAGGCTCAAGAGATATAAGATTTGTTAACGACGGATTGCGACAGAACCGTGAGCCGAAGGCGGAGACTAGATGCGGTTGTGAGGCAGAGATGCGAGTTCACGTGCATTCAGAAAGTGGTAGATGGATAATATTGTACTTTCAGGAAGTTTACAACCACAAATTTTTAGAGGATAGACTAACCTGTATGCTATCGGGGCATAGGAAAATGGATGGATGTAGTCATTTGGAACAAATGAACATGATGCTGAAAGTTGGGATTATTCTTTATGCGCTGCATATCCAAAGGAGGTCTGGGAAAGCACACTCTGATCTGCTATCTGTGGTTGGGGATATGTCAGCTTCCAACAAGCTCACAAAAGAGATTTTCTTCTTATTCAGTCCGATGCTTTTCCGGACATGTACACTGAAGGTACAGACACATGCTTTGAGCCAAACTTGTGATATATACACTTTGTCAAGGTCAATTAACACTCGTAAGGAGTGGCAAGTGGGTCGCTATTGTGACAATAATATTTTCAAGTGTTCGTGCTTGCGGATGGAGTCTCTTGGTATACCGTGTGATCATATTGTAGCAGTGCTCATACATGTGCAATTGAGTGATACACCAGATAGTCTTGTTCTCGATCGTTGGTCGAAGAATGCTCGCTCCAAAGTAAGGGCATTTGTGGAGAAAGCTCCGTTTTGTTGGGATTCAACGATCACGTTGGATGCTGAATGA 804 0.4216 MNDFAVRKNKIQRNVKNEVTQQEFVCFRQGSRDIRFVNDGLRQNREPKAETRCGCEAEMRVHVHSESGRWIILYFQEVYNHKFLEDRLTCMLSGHRKMDGCSHLEQMNMMLKVGIILYALHIQRRSGKAHSDLLSVVGDMSASNKLTKEIFFLFSPMLFRTCTLKVQTHALSQTCDIYTLSRSINTRKEWQVGRYCDNNIFKCSCLRMESLGIPCDHIVAVLIHVQLSDTPDSLVLDRWSKNARSKVRAFVEKAPFCWDSTITLDAE* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2426 267 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 142 247 IPR031052 GO:0006355
Amo19g2426 267 Pfam FAR1 DNA-binding domain 4 84 IPR004330 -
Amo19g2426 267 PANTHER OS04G0354200 PROTEIN 142 247 - -
Amo19g2426 267 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 4 84 IPR031052 GO:0006355
Amo19g2426 267 ProSiteProfiles Zinc finger SWIM-type profile. 178 226 IPR007527 GO:0008270
Amo19g2426 267 PANTHER OS04G0354200 PROTEIN 4 84 - -
Amo19g2426 267 SMART 26again6 201 228 IPR006564 GO:0008270
Amo19g2426 267 Pfam SWIM zinc finger 202 225 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2426 Amo-Chr19 113143955 113145616 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo19g2426 FAR1 5.2e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2426 - - aip:107627027 198.364