Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2425 ATGGCAACATCAGCATCCGCATATGAGAATGATATCAAGAACCTTAAGGCAACAGAACTCACATTGGGTTTGCCAGGGACTCATCTTCAAGAGAATATACCTATTATTGATCAAGAAAAATCATCAGCATCATCATCATCAAACAAGAGGCCATTGCAATTGCCTCATGAAGAAACTTCTCCTGCTCAGGACTGTGGATCCAAGTGCTCTAATATTGCTAAGAACACTGATGATGATGCTGCACCCCCTCCTTCCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCATACAGGAAGAACAGCCTTCAGGAACAATCTGAGGCTGCAGGTGGGATCTATGTGAAGGTGAGCATGGATGGAGCACCTTACCTCAGAAAGATTGATTTGAAGATCTATGGAGGCTATCCACAACTCCTCAAATCCCTTGAAAACATGTTCAAGTTGACTATAGGTGAGTACTCTGAAAAGGAAGGGTATAAGGGATCTGATTATGCACCAACATATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCTTGGGACATGTTTGTGACTTCGTGTAAGAGGCTAAGAATCATGAAAGGATCTGAAGCCAGAGGTTTGGGTTGTGCTGTATGA 630 0.4365 MATSASAYENDIKNLKATELTLGLPGTHLQENIPIIDQEKSSASSSSNKRPLQLPHEETSPAQDCGSKCSNIAKNTDDDAAPPPSKAKIVGWPPIRSYRKNSLQEQSEAAGGIYVKVSMDGAPYLRKIDLKIYGGYPQLLKSLENMFKLTIGEYSEKEGYKGSDYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGLGCAV* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2425 209 PANTHER AUXIN-INDUCED PROTEIN 14 206 - -
Amo19g2425 209 Gene3D - 107 209 - -
Amo19g2425 209 SUPERFAMILY CAD & PB1 domains 108 198 - -
Amo19g2425 209 ProSiteProfiles PB1 domain profile. 112 199 IPR000270 GO:0005515
Amo19g2425 209 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 14 206 IPR003311 GO:0005634|GO:0006355
Amo19g2425 209 MobiDBLite consensus disorder prediction 34 54 - -
Amo19g2425 209 Pfam AUX/IAA family 18 206 IPR033389 -
Amo19g2425 209 MobiDBLite consensus disorder prediction 23 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2425 Amo-Chr19 113107924 113109568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2425 101 205 B3 DNA Binding Superfamily AT2G46530 35.849 7.58e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo19g2425 AUX_IAA 5.4e-56 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2425 K14484 - gmx:100527777 272.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2425 19 113107924 113109568 Amo19g2425 19 113107924 113109568 ECH