Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2403 ATGGTAGGACTTGAGATCATACCAATAGGCACAATTTTGGCAGTGCTAACCAACCAGGTCTTGAAAACGGCTCATGCAGCGGCCGATGTTCTTATAGGCAAAGAAAGTTTCAAAATCCTCTCAAAACACCTCTTTGATATTGAGCCTGTTCTGAAGGAACTACAGCTTCAAGAGCTCAATGAATCTCAAGCTGCAAGGGCTGCTTTGGAATCACTAGAATCAGATGTCAAAAGGGCTAACAATTTGGTCGAAAAGTACAGGAACCGTGGCAGATTCTATCTTCTGGTTAAGTGCAGATACATAGTTGGGGAGGTTGAGCAAGTCACAAGAGATATTGGCAAGTCTCTGGCTGCACTTTCGCTTGCGAATACTGAAGTCCTAACAAGAATCTCTGATCAGGTTGACAGGCTGCAGAATGAGATGCAGAGAGTGGAGTTTGAGGCTTCGCGGTCGCAGCTTCAGATTGTTGAGAAGTTAGATTATGCACTTAGAGAACAGAAACTCGATCAGGCTTTCGCAAATGACATGCTTGAGGAAATAGCAAGAGCCGTTGGCGTGCCAGTGGAGCCTTCAGAGATAAGCAAAGAATTAGCCAGCATTAGGAAGGAGAAAGAAGAAGCTGCAAGCCGGAAAGAGCGAGCCGAGTACATTTTCTTGGAGCAGATCATTGAGTTACTCTCTAGAGCTGATGCAGCAAGGGACTATGAAGGAGTGAAGAAACAATACTTTGAAAGAGTTCAAGTCATAGAAAGGTATGATTCAAGGGAAAGATATATCTTACCACTCAATCCTTTCCTCTGCTCGATAACCGGCGTGGTTATGGTTGATCCTGTTAGCCTTTGTACTGGTACTACATGTGAGAGATCTGCCATTGAAGATTGGTTTCACAATGGGAACCGAACGGATCCAGAAACAAACGAGGTTCTTGAAGAAACTACCCTGAGGTCTAACATTCCACTAAGACAATCCATAGAAGAATGGAGAGAACTTAATTATTGTCTTGTTATAAGGTCTATCAAGGAAAATCTGATCACAAATTATGAAGTGCACGAGTCTTTGAGCCTAATTCAGGCCCTTATGAGAGAAAATTCTATTAACAAGGATTGGATTTCTATTGGAGGGGTAACGGATGTTGTTATCTCTATCCTTGGAAACTCTAATTATAAAGAAGCCAAGTTGAGGATTCTGATTACTCTGAAGGATGTTGTAGAGGGACATGCAAGAAACAAGGAGAAGGTGGCTGAATCTCAAGGATGGGATCAGATTATTTGTTGCTTAGGGGGTGATTCTAGCACTTCAAAGGCAGCAATCGATCTGCTGTACGAGTTGCTTCAAGGGCGGTCCGGCTGGAACAAAAGCTTTTGCAAAAAACTCTCTCAGAATCAGAATGCAATTCCTTTCCTTGTCACCTTTCTAAAGGGATCAGACAACGATTCAGCCGAGGCAGCAGAAAAGATTTTGATGGAAGTTTTCAAAATAAATGAGGAAAGTATTACAACTGCTGCTAGATTTGGCTGGTATAAACCCCTCGTTGATCGCATGATTCAAGAACCAGATTCGAGACTAGGAATGGTGAAAGGCATAGTAAGCTTGGAGTTAAACCTGTTAGAGTTGAAAGAACTTGGTGAGGAAGGTGTTATACCTCCTCTTCTAGAAATGCTATGTGGAAGCATTGAATCAAAGGACTTGTCACTATCAGCACTGGTTAAACTAGCAGGATGTCCTCCAAACAAGAGAATAATCGCAGAATCTGGAGGTGTTCCTTTGATTCTAGATCTAACATTCTCAACGCGGATGAGGACATTCATTACTATCAAATGCTGCGAAATCCTGGAGAAGCTTTCCTTTGATGAAGATGGAATAGACTTGTTTGTTGACAGAGAAGGGAATCAACTTGAGTTAGATTCCATCATCACCAATTTGCTAGCATTGCAGCAGAGTTTCAACACTGGATACAATTTTCGCAAGCCTGCGCTGCGCGCTCTTTTAGGCATTTGCAAGTTTGAGACTGATTTAATTAAGAAGGCAATTCTTGCAGCCAATAGTGTCTCTCTAATTCTTCCACTTCTTGATGACTCTGATTCAGAAATCCGAGAAACTGCAATAAACTTGCTCTTTCTATTCTCCCAGCACGAGCCGGATGGAGTAGTTGAGTATCTCTTCAGGCCTAGAAGGCTAGAAGCCTTGATTGGTTTTCTTGAGAATGATGAGAATGACAATGTGAGGATGGCTGCGGCCGGATTACTTGCAAACCTGCCTAAATCAGAAAGAGAACTCACTATGAAGTTGATTGAATTAGGTGGACTTGATGCTATAATAAGCATATTGAGAACTGGTACAATGGAAGCCAAGGAAAATGCTCTGAGTGCACTCTTTAGATTCACTGATCCTACAAATATCGAGTCGCAGCGCGATCTTGTTAAACGAGGGATATATCCTCTACTTGTCAACTTTCTCAACACTGGTTCTGTCACAGCAAAGGCAAGAGCAGCAGCATTCATTGCTGATCTATCAATGAGCACTCCAAAGCTCACAATTGTTTCTAAATCGCCCAGCTGCTGGTTTTTCAAGTCGTCACGAGTTCCCTTATGCTTGGCGCATGGAAGCATATGCAGTGTTGCCACCACATTCTGCCTTATTGAAGCAAATGCCTTACCTGGATTGATCAAATTACTGCACGGAGAGGTTCATGCTACTGCTTATGAAGCAATTCAAACACTTTCTACATTGGTTTTGGAGGATTTTCCTCAGAGAGGAGCCATAGTCCTGCATAAGAACAATGCAATAACACCCTTGTTGGAGATTCTGAATTGGGGTTCTGATTCTCTCAAAGCTGAAGCTCTAGGACTATTAGAAAAGGTCTTTGTGTCAAAGGAAATGGTGGAGTATTATGGAACAACAGCCAGGTTGAGGCTAATTGGAATCACTGGCATGAATATCTATGGAGATGGCCACCTTAGAAGGAAGGCTGCTAAGGTACTATCTTTGCTCGAGCGATATTCGAGGTCATCGTCCTCTGCAATCTCCGGTGTTCCGGAGTGA 3042 0.427 MVGLEIIPIGTILAVLTNQVLKTAHAAADVLIGKESFKILSKHLFDIEPVLKELQLQELNESQAARAALESLESDVKRANNLVEKYRNRGRFYLLVKCRYIVGEVEQVTRDIGKSLAALSLANTEVLTRISDQVDRLQNEMQRVEFEASRSQLQIVEKLDYALREQKLDQAFANDMLEEIARAVGVPVEPSEISKELASIRKEKEEAASRKERAEYIFLEQIIELLSRADAARDYEGVKKQYFERVQVIERYDSRERYILPLNPFLCSITGVVMVDPVSLCTGTTCERSAIEDWFHNGNRTDPETNEVLEETTLRSNIPLRQSIEEWRELNYCLVIRSIKENLITNYEVHESLSLIQALMRENSINKDWISIGGVTDVVISILGNSNYKEAKLRILITLKDVVEGHARNKEKVAESQGWDQIICCLGGDSSTSKAAIDLLYELLQGRSGWNKSFCKKLSQNQNAIPFLVTFLKGSDNDSAEAAEKILMEVFKINEESITTAARFGWYKPLVDRMIQEPDSRLGMVKGIVSLELNLLELKELGEEGVIPPLLEMLCGSIESKDLSLSALVKLAGCPPNKRIIAESGGVPLILDLTFSTRMRTFITIKCCEILEKLSFDEDGIDLFVDREGNQLELDSIITNLLALQQSFNTGYNFRKPALRALLGICKFETDLIKKAILAANSVSLILPLLDDSDSEIRETAINLLFLFSQHEPDGVVEYLFRPRRLEALIGFLENDENDNVRMAAAGLLANLPKSERELTMKLIELGGLDAIISILRTGTMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLNTGSVTAKARAAAFIADLSMSTPKLTIVSKSPSCWFFKSSRVPLCLAHGSICSVATTFCLIEANALPGLIKLLHGEVHATAYEAIQTLSTLVLEDFPQRGAIVLHKNNAITPLLEILNWGSDSLKAEALGLLEKVFVSKEMVEYYGTTARLRLIGITGMNIYGDGHLRRKAAKVLSLLERYSRSSSSAISGVPE* 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2403 1013 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Amo19g2403 1013 Gene3D - 536 850 IPR011989 -
Amo19g2403 1013 SUPERFAMILY ARM repeat 648 998 IPR016024 -
Amo19g2403 1013 SUPERFAMILY RING/U-box 249 330 - -
Amo19g2403 1013 SMART arm_5 670 710 IPR000225 GO:0005515
Amo19g2403 1013 SMART arm_5 872 912 IPR000225 GO:0005515
Amo19g2403 1013 SMART arm_5 756 796 IPR000225 GO:0005515
Amo19g2403 1013 SMART arm_5 406 445 IPR000225 GO:0005515
Amo19g2403 1013 SMART arm_5 713 754 IPR000225 GO:0005515
Amo19g2403 1013 SMART arm_5 534 573 IPR000225 GO:0005515
Amo19g2403 1013 SMART arm_5 916 956 IPR000225 GO:0005515
Amo19g2403 1013 SMART arm_5 574 616 IPR000225 GO:0005515
Amo19g2403 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1010 - -
Amo19g2403 1013 Gene3D - 8 123 IPR036537 GO:0007166
Amo19g2403 1013 Gene3D - 851 1008 IPR011989 -
Amo19g2403 1013 Gene3D - 345 535 IPR011989 -
Amo19g2403 1013 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Amo19g2403 1013 Coils Coil 127 154 - -
Amo19g2403 1013 SUPERFAMILY ARM repeat 357 713 IPR016024 -
Amo19g2403 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1010 - -
Amo19g2403 1013 Coils Coil 62 89 - -
Amo19g2403 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 334 IPR013083 -
Amo19g2403 1013 Pfam U-box domain 265 329 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2403 Amo-Chr19 111523500 111527921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2403 265 970 U-box Gene Family AT1G76390 27.392 2.46e-36 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2403 - - gmx:100783638 1554.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2403 19 111523500 111527921 Amo19g2403 19 111523500 111527921 ECH
Amo19g2403 19 111523500 111527921 Amo09g2021 09 84534884 84539190 hybridization